Regulog GntR - Enterobacteriales
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Gluconate utilization |
| Effector: | Gluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - GntR
- By TF family - LacI
- By effector - Gluconate
- By pathway - Gluconate utilization
| Genome | Genes | Operons |
|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | 10 | 5 |
| Salmonella typhimurium LT2 | 10 | 5 |
| Citrobacter koseri ATCC BAA-895 | 8 | 4 |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | 5 | 3 |
| Enterobacter sp. 638 | 5 | 3 |
| Erwinia amylovora ATCC 49946 | 5 | 2 |
| Yersinia pestis KIM | 3 | 3 |
| Serratia proteamaculans 568 | 12 | 5 |
| Erwinia carotovora subsp. atroseptica SCRI1043 | 5 | 5 |
| Edwardsiella tarda EIB202 | 2 | 1 |
| Proteus mirabilis HI4320 | 4 | 2 |
| Photorhabdus luminescens subsp. laumondii TTO1 | 2 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| gadA |
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Gene: KPN_02084: Gluconate 2-dehydrogenase subunit (EC 1.1.99.3) |
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Erwinia amylovora ATCC 49946 Site: position = -133 score = 5.80241 sequence = TATTGTTACCGGTAACAGTC Gene: EAM_0336: Gluconate 2-dehydrogenase subunit (EC 1.1.99.3) |
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*
Serratia proteamaculans 568 Site: position = -131 score = 5.93391 sequence = ATAAGTTACCGGTAACATTG Gene: Spro_2136: Gluconate 2-dehydrogenase subunit (EC 1.1.99.3) |
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Gluconate 2-dehydrogenase subunit (EC 1.1.99.3) |
| gadB |
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Gene: KPN_02083: Gluconate 2-dehydrogenase, flavoprotein subunit (EC 1.1.99.3) |
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Gene: EAM_0337: Gluconate 2-dehydrogenase, flavoprotein subunit (EC 1.1.99.3) |
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Gene: Spro_2137: Gluconate 2-dehydrogenase, flavoprotein subunit (EC 1.1.99.3) |
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Gluconate 2-dehydrogenase, flavoprotein subunit (EC 1.1.99.3) |
| gadC |
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Gene: KPN_02082: Gluconate 2-dehydrogenase, cytochrome C subunit (EC 1.1.99.3) |
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Gene: EAM_0338: Gluconate 2-dehydrogenase, cytochrome C subunit (EC 1.1.99.3) |
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Gene: Spro_2138: Gluconate 2-dehydrogenase, cytochrome C subunit (EC 1.1.99.3) |
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Gluconate 2-dehydrogenase, cytochrome C subunit (EC 1.1.99.3) |
| CRON 2. | |||||||||||||
| gntK |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -48 score = 5.76626 sequence = AACAGTTACCCGTAACATTT Site: position = -61 score = 6.36966 sequence = CAATGTTACCGATAACAGTT Gene: b3437: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Salmonella typhimurium LT2 Site: position = -48 score = 5.1261 sequence = AACAGTTACCCGTAACAAAT Site: position = -61 score = 6.36966 sequence = CAATGTTACCGATAACAGTT Gene: STM3542: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Citrobacter koseri ATCC BAA-895 Site: position = -101 score = 6.36966 sequence = CAATGTTACCGATAACAGTT Site: position = -88 score = 5.6094 sequence = AACAGTTACCCGTAACAATT Gene: CKO_04856: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -58 score = 6.36966 sequence = CAATGTTACCGATAACAGTT Site: position = -45 score = 5.6094 sequence = AACAGTTACCCGTAACAATT Gene: KPN_03801: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Enterobacter sp. 638 Site: position = -49 score = 5.77929 sequence = CAATGTTACCGATAACTGTT Site: position = -36 score = 6.00818 sequence = AACTGTTACCCGTAACAATT Gene: Ent638_3845: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Erwinia amylovora ATCC 49946 Site: position = -59 score = 5.85384 sequence = CAATGTTACCGATAACAACG Gene: EAM_3275: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Yersinia pestis KIM Site: position = -91 score = 5.63222 sequence = ATTTGTTACCGGTATCATGA Site: position = -77 score = 5.53916 sequence = TCATGATACCGGTAACATGG Gene: y3876: Thermoresistant gluconokinase (EC 2.7.1.12) |
*2
Serratia proteamaculans 568 Gene: Spro_4650: Thermoresistant gluconokinase (EC 2.7.1.12) Site: position = -73 score = 6.43468 sequence = CAATGTTACCGATAACATGT Site: position = -59 score = 5.50156 sequence = ACATGTTACCGGTAACAAAC Gene: Spro_4497: Thermoresistant gluconokinase (EC 2.7.1.12) |
*2
Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -91 score = 5.44127 sequence = ACTTGTTACCGGTATCATGA Site: position = -77 score = 5.08722 sequence = TCATGATACCGGTAACGTGA Gene: ECA1839: Thermoresistant gluconokinase (EC 2.7.1.12) Site: position = -77 score = 5.27232 sequence = ATATGATACGGGTAACATGT Gene: ECA4159: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Edwardsiella tarda EIB202 Site: position = -58 score = 5.4073 sequence = AACAGTTACCAGTAACATTG Site: position = -71 score = 5.993 sequence = GAATGTTACCCATAACAGTT Gene: ETAE_0135: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Proteus mirabilis HI4320 Site: position = -67 score = 6.38587 sequence = TAATGTTACCCGTAACAGTT Site: position = -54 score = 5.29657 sequence = AACAGTTACGGGTAACATTA Gene: PMI2673: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Photorhabdus luminescens subsp. laumondii TTO1 Site: position = -52 score = 5.91652 sequence = AACAGTTACCGGTAACATTT Site: position = -65 score = 6.36966 sequence = TAATGTTACCGATAACAGTT Gene: plu0497: Thermoresistant gluconokinase (EC 2.7.1.12) |
Thermoresistant gluconokinase (EC 2.7.1.12) |
| gntU |
Gene: b4476: Low-affinity gluconate transporter |
Gene: STM3541: Low-affinity gluconate transporter |
Gene: CKO_04855: Low-affinity gluconate transporter |
Gene: KPN_03800: Low-affinity gluconate transporter |
Gene: Ent638_3844: Low-affinity gluconate transporter |
Gene: EAM_3274: Low-affinity gluconate transporter |
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Gene: Spro_4498: Low-affinity gluconate transporter |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -100 score = 5.45063 sequence = ACATGTTACCCGTATCATAT Gene: ECA4158: Low-affinity gluconate transporter |
Gene: ETAE_0134: Low-affinity gluconate transporter |
Gene: PMI2672: Low-affinity gluconate transporter |
Gene: plu0498: Low-affinity gluconate transporter |
Low-affinity gluconate transporter |
| edd |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -212 score = 6.29244 sequence = TTATTTTACCGGTAACATGA Gene: b1851: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Salmonella typhimurium LT2 Site: position = -212 score = 6.06605 sequence = GTATTTTACCGGTAACATGA Gene: STM1885: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Citrobacter koseri ATCC BAA-895 Site: position = -211 score = 6.29244 sequence = TTATTTTACCGGTAACATGA Gene: CKO_01115: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -211 score = 6.29244 sequence = TTATTTTACCGGTAACATGA Site: position = -2 score = 5.41825 sequence = CAATGTTACGGGTAACAAAT Gene: KPN_02366: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Enterobacter sp. 638 Site: position = -210 score = 6.29244 sequence = TTATTTTACCGGTAACATGA Gene: Ent638_2420: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Gene: y1654: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: Spro_4499: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -359 score = 5.85753 sequence = CATTGTTACCGGTATCATTT Gene: ECA1836: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
Gene: ETAE_1451: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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Proteus mirabilis HI4320 Site: position = -111 score = 5.07794 sequence = GCTTGTTACCCGTAACAATG Site: position = -96 score = 6.44429 sequence = CAATGTTACCGGTAACAAGT Gene: PMI2760: 6-phosphogluconate dehydratase (EC 4.2.1.12) |
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6-phosphogluconate dehydratase (EC 4.2.1.12) |
| eda |
Gene: b1850: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: STM1884: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: CKO_01116: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: KPN_02365: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: Ent638_2419: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
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Gene: y2243: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
2
Serratia proteamaculans 568 Gene: Spro_2767: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) Gene: Spro_4500: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: ECA2478: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: ETAE_1452: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
Gene: PMI2761: 2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
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2-keto-3-deoxygluconate 6-phosphate aldolase (EC 4.1.2.14) |
| gntT |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -178 score = 5.8539 sequence = AGATGTTACCCGTATCATTC Site: position = -37 score = 4.89779 sequence = TGACGTTACCCATAACAAAT Gene: b3415: High-affinity H+/gluconate symporter |
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Salmonella typhimurium LT2 Site: position = -178 score = 5.95688 sequence = ATATGTTACCCGTATCATTC Site: position = -37 score = 4.72978 sequence = TGACGTTACCCATAACAAAG Gene: STM3512: High-affinity H+/gluconate symporter |
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Citrobacter koseri ATCC BAA-895 Site: position = -178 score = 5.95688 sequence = ATATGTTACCCGTATCATTC Site: position = -37 score = 4.89779 sequence = CGACGTTACCCATAACAAAT Gene: CKO_04836: High-affinity H+/gluconate symporter |
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Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -180 score = 5.46231 sequence = ACATGTTACCCGTATCATCC Site: position = -36 score = 4.89779 sequence = TGACGTTACCCATAACAAAT Gene: KPN_03785: High-affinity H+/gluconate symporter |
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Enterobacter sp. 638 Site: position = -178 score = 5.8539 sequence = AGATGTTACCCGTATCATTC Site: position = -37 score = 4.89779 sequence = TGACGTTACCCATAACAAAT Gene: Ent638_3828: High-affinity H+/gluconate symporter |
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Yersinia pestis KIM Site: position = -159 score = 6.04242 sequence = CCATGTTACCGGTATCATGA Site: position = -145 score = 5.11464 sequence = TCATGATACCGGTAACAAAT Gene: y3875: High-affinity H+/gluconate symporter |
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Serratia proteamaculans 568 Site: position = -185 score = 5.33828 sequence = GGTTGTTACCGGTATCATGA Site: position = -171 score = 5.42993 sequence = TCATGATACCGGTAACAATG Gene: Spro_4651: High-affinity H+/gluconate symporter |
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Erwinia carotovora subsp. atroseptica SCRI1043 Site: position = -239 score = 5.46395 sequence = TCACGTTACCGGTATCATGA Site: position = -225 score = 5.55031 sequence = TCATGATACCGGTAACAAGT Gene: ECA1840: High-affinity H+/gluconate symporter |
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High-affinity H+/gluconate symporter |
| CRON 3. | |||||||||||||
| sdxX |
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Yersinia pestis KIM Site: position = -237 score = 5.71908 sequence = TCACGTTACCGGTAACATGT Gene: y1651: putative 2-ketogluconate dehydrogenase |
Gene: Spro_2497: putative 2-ketogluconate dehydrogenase |
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putative 2-ketogluconate dehydrogenase |
| CRON 4. | |||||||||||||
| idnD |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -146 score = 3.82217 sequence = TAtTtcTACtGaTAAgAaTT Site: position = -116 score = 3.7844 sequence = TcAcGTTAtgcGTAACATag Gene: b4267: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Salmonella typhimurium LT2 Site: position = -116 score = 4.2677 sequence = TcAcGTTAtgcGTAACATTg Gene: STM4484: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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Gene: Spro_3287: L-idonate 5-dehydrogenase (EC 1.1.1.264) |
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L-idonate 5-dehydrogenase (EC 1.1.1.264) |
| idnO |
Gene: b4266: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
Gene: STM4483: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Citrobacter koseri ATCC BAA-895 Site: position = -39 score = 4.79507 sequence = TACAGTTACGCGTAACAGCT Gene: CKO_02793: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gene: y1645: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Serratia proteamaculans 568 Site: position = -120 score = 4.1697 sequence = TcAcGTTAaaGGTAACAgcT Gene: Spro_3288: Gluconate 5-dehydrogenase (EC 1.1.1.69) |
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Gluconate 5-dehydrogenase (EC 1.1.1.69) |
| idnT |
Gene: b4265: L-idonate and D-gluconate transporter |
Gene: STM4482: L-idonate and D-gluconate transporter |
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L-idonate and D-gluconate transporter |
| idnR |
Gene: b4264: L-idonate utilization transcriptional regulator IdnR, LacI family |
Gene: STM4481: L-idonate utilization transcriptional regulator IdnR, LacI family |
Gene: CKO_02791: L-idonate utilization transcriptional regulator IdnR, LacI family |
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Gene: y1650: L-idonate utilization transcriptional regulator IdnR, LacI family |
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Serratia proteamaculans 568 Site: position = -169 score = 4.37405 sequence = AGCTGTTACCTTTAACGTGA Gene: Spro_3289: L-idonate utilization transcriptional regulator IdnR, LacI family |
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L-idonate utilization transcriptional regulator IdnR, LacI family |
| uhpC |
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Gene: CKO_02792: Predicted sugar-phosphate permease |
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Predicted sugar-phosphate permease |
| idnK |
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Escherichia coli str. K-12 substr. MG1655 Site: position = -119 score = 4.96145 sequence = CTATGTTACGCATAACGTGA Gene: b4268: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Salmonella typhimurium LT2 Site: position = -119 score = 5.0741 sequence = CAATGTTACGCATAACGTGA Gene: STM4485: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Gene: y1646: Thermoresistant gluconokinase (EC 2.7.1.12) |
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Thermoresistant gluconokinase (EC 2.7.1.12) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |