Regulog GntR - Burkholderia

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Gluconate utilization
Effector:	Gluconate
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Burkholderia
By trascription factor - GntR
By TF family - LacI
By effector - Gluconate
By pathway - Gluconate utilization

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243
Burkholderia mallei ATCC 23344
Burkholderia sp. 383
Burkholderia cepacia AMMD
Burkholderia vietnamiensis G4
Burkholderia glumae BGR1
Burkholderia xenovorans LB400
Burkholderia phymatum STM815	4	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
gntR	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	* Burkholderia phymatum STM815 Site: position = -27 score = 6.21942 sequence = TTGAGACAGCGCTATCCTAA Site: position = -129 score = 6.73082 sequence = CCGAGACAGCGCTGTCTCAG Gene: Bphy_5547: Gluconate utilization transcriptional regulator GntR, LacI family	Gluconate utilization transcriptional regulator GntR, LacI family

CRON 2.
gntK	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	* Burkholderia phymatum STM815 Site: position = -35 score = 6.73082 sequence = CTGAGACAGCGCTGTCTCGG Site: position = -137 score = 6.21942 sequence = TTAGGATAGCGCTGTCTCAA Gene: Bphy_5548: Thermoresistant gluconokinase (EC 2.7.1.12)	Thermoresistant gluconokinase (EC 2.7.1.12)
gntP	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815 Gene: Bphy_5549: Predicted gluconate permease	Predicted gluconate permease
gntO	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	Burkholderia vietnamiensis G4	Burkholderia glumae BGR1	Burkholderia xenovorans LB400	Burkholderia phymatum STM815 Gene: Bphy_5550: Predicted gluconate specific outer membrane porin	Predicted gluconate specific outer membrane porin

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog GntR - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --