Regulog NrdR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - NrdR
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 5 | 2 |
| Vibrio vulnificus CMCP6 | 5 | 2 |
| Vibrio harveyi ATCC BAA-1116 | 5 | 2 |
| Vibrio parahaemolyticus RIMD 2210633 | 5 | 2 |
| Vibrio shilonii AK1 | 5 | 2 |
| Vibrio splendidus LGP32 | 5 | 2 |
| Vibrio fischeri ES114 | 4 | 2 |
| Vibrio salmonicida LFI1238 | 4 | 2 |
| Vibrio angustum S14 | 5 | 2 |
| Photobacterium profundum SS9 | 5 | 2 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| nrdA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -103 score = 4.38399 sequence = ACACTATATGTAGGGC Site: position = -124 score = 5.35652 sequence = CCCCTACATATAGTGT Gene: VC1256: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio vulnificus CMCP6 Site: position = -134 score = 5.55791 sequence = CCCCTATATGTTGTGT Site: position = -113 score = 4.10801 sequence = CTACAATATGTAGATA Gene: VV1_3041: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -133 score = 5.55791 sequence = CCCCTATATGTTGTGT Site: position = -112 score = 4.16736 sequence = CTACAATATATAGATA Gene: VIBHAR_02733: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -133 score = 5.55791 sequence = CCCCTATATGTTGTGT Site: position = -112 score = 4.16736 sequence = CTACAATATATAGATA Gene: VP1934: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio shilonii AK1 Site: position = -156 score = 3.7823 sequence = TAGCACTATCTTGTAA Site: position = -124 score = 5.49675 sequence = CCCCTATATCTTGTGT Gene: VSAK1_01227: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio splendidus LGP32 Site: position = -165 score = 3.7823 sequence = TAGCACTATCTTGTAA Site: position = -133 score = 5.55791 sequence = CCCCTATATGTTGTGT Gene: VS_1939: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio fischeri ES114 Site: position = -144 score = 3.51229 sequence = AATCACTATCTTGTAG Site: position = -113 score = 5.12108 sequence = GCCCTATATCTTGTGT Gene: VF_1202: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio salmonicida LFI1238 Site: position = -153 score = 4.17489 sequence = AATCACTATCTTGTAT Site: position = -122 score = 5.53669 sequence = CCCCTATATGTAGTGT Gene: VSAL_I1769: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Vibrio angustum S14 Site: position = -122 score = 5.54988 sequence = CCCCAATATGTAGTGT Site: position = -154 score = 4.4389 sequence = CACCACTATCTTGTAA Gene: VAS14_18479: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
*
Photobacterium profundum SS9 Site: position = -151 score = 4.02254 sequence = CATCACTATCTTGTAA Site: position = -119 score = 5.54988 sequence = CCCCAATATGTAGTGT Gene: PBPRA2459: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1) |
| nrdB |
Gene: VC1255: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VV1_3042: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VIBHAR_02734: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VP1935: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VSAK1_01222: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VS_1940: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VF_1201: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VSAL_I1770: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: VAS14_18474: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Gene: PBPRA2460: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1) |
| yfaE |
Gene: VC1254: Ferredoxin |
Gene: VV1_3043: Ferredoxin |
Gene: VIBHAR_02735: Ferredoxin |
Gene: VP1936: Ferredoxin |
Gene: VSAK1_01217: Ferredoxin |
Gene: VS_1941: Ferredoxin |
Gene: VF_1199: Ferredoxin |
Gene: VSAL_I1772: Ferredoxin |
Gene: VAS14_18469: Ferredoxin |
Gene: PBPRA2461: Ferredoxin |
Ferredoxin |
| CRON 2. | |||||||||||
| nrdD |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -58 score = 4.38626 sequence = TAGCCCTATATAGTGT Site: position = -89 score = 5.36971 sequence = CCACAACATATAGTGT Gene: VCA0511: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio vulnificus CMCP6 Site: position = -61 score = 4.80263 sequence = TAACCCTATATAGTGT Site: position = -92 score = 5.17208 sequence = CCACAATATATAGTGC Gene: VV20337: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -59 score = 4.56311 sequence = TAACCCCATATAGTGT Site: position = -90 score = 5.63045 sequence = CCACAATATATTGTGT Gene: VIBHAR_05713: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -60 score = 4.56311 sequence = TAACCCCATATAGTGT Site: position = -91 score = 5.63045 sequence = CCACAATATATTGTGT Gene: VPA0941: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio shilonii AK1 Site: position = -60 score = 5.04287 sequence = CAACCCTATATAGTGT Site: position = -91 score = 5.63045 sequence = CCACAATATATTGTGT Gene: VSAK1_14882: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio splendidus LGP32 Site: position = -86 score = 5.48871 sequence = CCACAATATCTAGTGT Site: position = -55 score = 4.28898 sequence = TCGCTCTATAGTGTGT Gene: VS_II0710: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio fischeri ES114 Site: position = -58 score = 4.96518 sequence = ACCCCACATCTTGTGT Site: position = -27 score = 4.85628 sequence = CCCCACTATTTAGTAT Gene: VF_A0281: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio salmonicida LFI1238 Site: position = -58 score = 4.96518 sequence = ACACCACATCTTGTGT Site: position = -27 score = 4.67155 sequence = ACCCACTATTTAGTAT Gene: VSAL_II0791: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Vibrio angustum S14 Site: position = -91 score = 3.64419 sequence = TACCCACATCTTGTTG Site: position = -59 score = 4.72102 sequence = TGCCTATATTTTGTGT Gene: VAS14_13509: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
*
Photobacterium profundum SS9 Site: position = -51 score = 4.77653 sequence = AGCCTATATTTTGTGT Site: position = -82 score = 4.73823 sequence = ACACCACATGTTGTAT Gene: PBPRB0442: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) |
| nrdG |
Gene: VCA0512: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VV20336: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VIBHAR_05714: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VPA0940: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VSAK1_14877: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VS_II0712: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VF_A0282: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VSAL_II0790: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: VAS14_13504: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Gene: PBPRB0443: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |