Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog NrdR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 40 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio cholerae O1 biovar eltor str. N16961 5 2
Vibrio vulnificus CMCP6 5 2
Vibrio harveyi ATCC BAA-1116 5 2
Vibrio parahaemolyticus RIMD 2210633 5 2
Vibrio shilonii AK1 5 2
Vibrio splendidus LGP32 5 2
Vibrio fischeri ES114 4 2
Vibrio salmonicida LFI1238 4 2
Vibrio angustum S14 5 2
Photobacterium profundum SS9 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -103
score = 4.38399
sequence = ACACTATATGTAGGGC

Site:
position = -124
score = 5.35652
sequence = CCCCTACATATAGTGT

Gene: VC1256: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio vulnificus CMCP6

Site:
position = -134
score = 5.55791
sequence = CCCCTATATGTTGTGT

Site:
position = -113
score = 4.10801
sequence = CTACAATATGTAGATA

Gene: VV1_3041: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -133
score = 5.55791
sequence = CCCCTATATGTTGTGT

Site:
position = -112
score = 4.16736
sequence = CTACAATATATAGATA

Gene: VIBHAR_02733: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -133
score = 5.55791
sequence = CCCCTATATGTTGTGT

Site:
position = -112
score = 4.16736
sequence = CTACAATATATAGATA

Gene: VP1934: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio shilonii AK1

Site:
position = -156
score = 3.7823
sequence = TAGCACTATCTTGTAA

Site:
position = -124
score = 5.49675
sequence = CCCCTATATCTTGTGT

Gene: VSAK1_01227: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio splendidus LGP32

Site:
position = -165
score = 3.7823
sequence = TAGCACTATCTTGTAA

Site:
position = -133
score = 5.55791
sequence = CCCCTATATGTTGTGT

Gene: VS_1939: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio fischeri ES114

Site:
position = -144
score = 3.51229
sequence = AATCACTATCTTGTAG

Site:
position = -113
score = 5.12108
sequence = GCCCTATATCTTGTGT

Gene: VF_1202: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio salmonicida LFI1238

Site:
position = -153
score = 4.17489
sequence = AATCACTATCTTGTAT

Site:
position = -122
score = 5.53669
sequence = CCCCTATATGTAGTGT

Gene: VSAL_I1769: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Vibrio angustum S14

Site:
position = -122
score = 5.54988
sequence = CCCCAATATGTAGTGT

Site:
position = -154
score = 4.4389
sequence = CACCACTATCTTGTAA

Gene: VAS14_18479: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Photobacterium profundum SS9

Site:
position = -151
score = 4.02254
sequence = CATCACTATCTTGTAA

Site:
position = -119
score = 5.54988
sequence = CCCCAATATGTAGTGT

Gene: PBPRA2459: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1255: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio vulnificus CMCP6

Gene: VV1_3042: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02734: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1935: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio shilonii AK1

Gene: VSAK1_01222: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio splendidus LGP32

Gene: VS_1940: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio fischeri ES114

Gene: VF_1201: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1770: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Vibrio angustum S14

Gene: VAS14_18474: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Photobacterium profundum SS9

Gene: PBPRA2460: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
yfaE
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC1254: Ferredoxin
 
Vibrio vulnificus CMCP6

Gene: VV1_3043: Ferredoxin
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02735: Ferredoxin
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1936: Ferredoxin
 
Vibrio shilonii AK1

Gene: VSAK1_01217: Ferredoxin
 
Vibrio splendidus LGP32

Gene: VS_1941: Ferredoxin
 
Vibrio fischeri ES114

Gene: VF_1199: Ferredoxin
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1772: Ferredoxin
 
Vibrio angustum S14

Gene: VAS14_18469: Ferredoxin
 
Photobacterium profundum SS9

Gene: PBPRA2461: Ferredoxin
Ferredoxin
 
CRON 2.
nrdD
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -58
score = 4.38626
sequence = TAGCCCTATATAGTGT

Site:
position = -89
score = 5.36971
sequence = CCACAACATATAGTGT

Gene: VCA0511: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio vulnificus CMCP6

Site:
position = -61
score = 4.80263
sequence = TAACCCTATATAGTGT

Site:
position = -92
score = 5.17208
sequence = CCACAATATATAGTGC

Gene: VV20337: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -59
score = 4.56311
sequence = TAACCCCATATAGTGT

Site:
position = -90
score = 5.63045
sequence = CCACAATATATTGTGT

Gene: VIBHAR_05713: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -60
score = 4.56311
sequence = TAACCCCATATAGTGT

Site:
position = -91
score = 5.63045
sequence = CCACAATATATTGTGT

Gene: VPA0941: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio shilonii AK1

Site:
position = -60
score = 5.04287
sequence = CAACCCTATATAGTGT

Site:
position = -91
score = 5.63045
sequence = CCACAATATATTGTGT

Gene: VSAK1_14882: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio splendidus LGP32

Site:
position = -86
score = 5.48871
sequence = CCACAATATCTAGTGT

Site:
position = -55
score = 4.28898
sequence = TCGCTCTATAGTGTGT

Gene: VS_II0710: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio fischeri ES114

Site:
position = -58
score = 4.96518
sequence = ACCCCACATCTTGTGT

Site:
position = -27
score = 4.85628
sequence = CCCCACTATTTAGTAT

Gene: VF_A0281: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio salmonicida LFI1238

Site:
position = -58
score = 4.96518
sequence = ACACCACATCTTGTGT

Site:
position = -27
score = 4.67155
sequence = ACCCACTATTTAGTAT

Gene: VSAL_II0791: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Vibrio angustum S14

Site:
position = -91
score = 3.64419
sequence = TACCCACATCTTGTTG

Site:
position = -59
score = 4.72102
sequence = TGCCTATATTTTGTGT

Gene: VAS14_13509: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Photobacterium profundum SS9

Site:
position = -51
score = 4.77653
sequence = AGCCTATATTTTGTGT

Site:
position = -82
score = 4.73823
sequence = ACACCACATGTTGTAT

Gene: PBPRB0442: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VCA0512: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio vulnificus CMCP6

Gene: VV20336: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_05714: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VPA0940: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio shilonii AK1

Gene: VSAK1_14877: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio splendidus LGP32

Gene: VS_II0712: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio fischeri ES114

Gene: VF_A0282: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0790: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Vibrio angustum S14

Gene: VAS14_13504: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Photobacterium profundum SS9

Gene: PBPRB0443: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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