Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Vibrio shilonii AK1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 10 18
TF BirA Biotin Biotin biosynthesis 2 2
TF CelR3 Cellobiose-6-phosphate Cellobiose utilization 2 2
TF CueR Copper ion, (Cu+) Copper resistance 5 2
TF EbgR Beta-galactosides Galactosides utilization 2 3
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 6 5
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 8 7
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 6
TF Fur Iron ion, (Fe2+) Iron homeostasis 48 48
TF GalR Galactose Galactose utilization 6 9
TF GntR Gluconate Gluconate utilization 2 2
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 24 17
TF HutC cis-Urocanic acid Histidine utilization 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 6 6
TF LexA DNA damage SOS response 19 22
TF LiuR Branched-chain amino acid degradation 4 4
TF MalI Maltose utilization 2 4
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 13 26
TF MetR Homocysteine Methionine biosynthesis 4 5
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 22 15
TF NanR (SiaQ) N-acetylmannosamine-6-phosphate Sialic acid utilization 3 1
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 20 20
TF NorR Nitric oxide Nitrosative stress response 7 8
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PBPRB0322 Metabolite transport 2 4
TF PdhR Pyruvate Pyruvate metabolism 1 2
TF PdxW Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 1 1
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 6 8
TF PhrR Heat shock; Adenosylcobalamin Light-dependent DNA repair 3 2
TF PrpR 2-methylcitrate Methylcitrate utilization 1 2
TF PsrA Oleate Fatty acid degradation 7 5
TF PurR Hypoxanthine; Guanine Purine metabolism 17 15
TF RbsR Ribose Ribose utilization 1 2
TF RutR Uracil Pyrimidine utilization 1 2
TF SoxR Paraquat Superoxide stress response 5 3
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 5 3
TF TtrR Tetrathionate Tetrathionate reduction 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 10 10
TF UxuR Glucuronate Glucuronate utilization 3 5
TF VCA0673 3 1
TF VF_1255 Sugar utilization 1 1
TF VIBHAR_07005 Multidrug resistance; Multidrug efflux 1 1
TF VP2396 Galactosides utilization 2 6
TF VSAK1_09283 Metabolite transport 2 4
TF VSAK1_25095 Xanthine utilization; Allantoin utilization 6 14
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 8 8
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 2 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA GEMM_RNA_motif Cyclic diguanylate Second messenger response 2 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 2 2
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis; Molybdenum homeostasis 1 1
RNA Purine Guanine; Adenine Purine metabolism 3 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA yybP-ykoY 2 2
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