Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Vibrio shilonii AK1

Properties
Regulator type: Transcription factor
TF locus tag: VSAK1_20304
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Vibrionales
Statistics of regulated genes:
- Genes 12
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 40 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -195
Score: 4.8
Sequence: TTTCAAAAAGGCTTTTCATAA
Position: -119
Score: 5.6
Sequence: AAATGAAACGGCATTTCAAAA
Locus tag: VSAK1_20309
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VSAK1_20314
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: VSAK1_20319
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
ygjV
Permease of the major facilitator superfamily
spiX
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)

Position: -161
Score: 5.4
Sequence: TTTTGAAATGCCGTTTCATTT
Position: -85
Score: 5.4
Sequence: TTATGAAAAGCCTTTTTGAAA
Locus tag: VSAK1_20304
Name: kdgR
Funciton: 2-keto-3-deoxygluconate regulator KdgR
kdgR
2-keto-3-deoxygluconate regulator KdgR

Position: -164
Score: 5.5
Sequence: TTTTAAAACGCAGTTTCAAAA
Locus tag: VSAK1_02644
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: VSAK1_02649
Name: oglP
Funciton: predicted oligogalacturonate TRAP transporter, substrate-binding subunit
Locus tag: VSAK1_02654
Name: oglQ
Funciton: predicted oligogalacturonate TRAP transporter, small transmembrane subunit
Locus tag: VSAK1_02659
Name: oglM
Funciton: predicted oligogalacturonate TRAP transporter, large transmembrane subunit
Locus tag: VSAK1_02664
Name: kdgR2
Funciton: Transcriptional regulator, IclR family
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
oglP
predicted oligogalacturonate TRAP transporter, substrate-binding subunit
oglQ
predicted oligogalacturonate TRAP transporter, small transmembrane subunit
oglM
predicted oligogalacturonate TRAP transporter, large transmembrane subunit
kdgR2
Transcriptional regulator, IclR family

Position: -189
Score: 5.8
Sequence: TATTAAAACGCCGTTTTAATA
Locus tag: VSAK1_20364
Name: VSAK1_20364
Funciton: Heparinase II/III-like protein
Locus tag: VSAK1_20369
Name: VSAK1_20369
Funciton: Heparinase II/III-like protein
Locus tag: VSAK1_20374
Name: togX2
Funciton: predicted oligogalacturonate transporter
VSAK1_20364
Heparinase II/III-like protein
VSAK1_20369
Heparinase II/III-like protein
togX2
predicted oligogalacturonate transporter
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