Regulog KdgR - Vibrionales

Properties
Regulator type:	Transcription factor
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 40 sites [see more]

Member of regulog collections

By trascription factor - KdgR
By taxonomy - Vibrionales
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio vulnificus CMCP6	14	7
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633	12	6
Vibrio shilonii AK1	12	4
Vibrio splendidus LGP32
Vibrio fischeri ES114
Vibrio salmonicida LFI1238
Vibrio angustum S14
Photobacterium profundum SS9	15	6

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
togX1	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -93 score = 5.48939 sequence = AAATGAACCGTTGTTTTGATT Site: position = -29 score = 5.13607 sequence = AATTAAAACAGCGTTTCGAGG Gene: VPA0087: predicted oligogalacturonate transporter	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -149 score = 5.52979 sequence = AAATGAACCGTTGTTTCGATT Site: position = -85 score = 5.31033 sequence = AATTAAAACGGCGTTTCGAGG Gene: PBPRB1723: predicted oligogalacturonate transporter	predicted oligogalacturonate transporter
ogl	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0088: Oligogalacturonate lyase (EC 4.2.2.6)	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1722: Oligogalacturonate lyase (EC 4.2.2.6)	Oligogalacturonate lyase (EC 4.2.2.6)

CRON 2.
VSAK1_20364	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	* Vibrio shilonii AK1 Site: position = -189 score = 5.79489 sequence = TATTAAAACGCCGTTTTAATA Gene: VSAK1_20364: Heparinase II/III-like protein	Vibrio splendidus LGP32 Gene: VS_1246: Heparinase II/III-like protein	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Heparinase II/III-like protein
VSAK1_20369	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_20369: Heparinase II/III-like protein	Vibrio splendidus LGP32 Gene: VS_1247: Heparinase II/III-like protein	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Heparinase II/III-like protein
togX2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -130 score = 5.19003 sequence = TTTTGAAACACCATTTTATTT Site: position = -40 score = 5.22216 sequence = CTTTAAAACGGTGTTTTAATT Gene: VPA0084: predicted oligogalacturonate transporter	Vibrio shilonii AK1 Gene: VSAK1_20374: predicted oligogalacturonate transporter	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	predicted oligogalacturonate transporter

CRON 3.
kdgM	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -110 score = 5.44752 sequence = AATTAAAACACCGTTTTAAAG Site: position = -20 score = 5.53499 sequence = AAATAAAATGGTGTTTCAAAA Gene: VPA0085: Oligogalacturonate-specific porin protein KdgM	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -122 score = 5.56897 sequence = AATTAAAACGCCGTTTCAATG Site: position = -32 score = 5.8477 sequence = AATTAAAACGGCGTTTTAAAA Gene: PBPRB1726: Oligogalacturonate-specific porin protein KdgM	Oligogalacturonate-specific porin protein KdgM
pelX	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0086: Exopolygalacturonate lyase (EC 4.2.2.9)	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1725: Exopolygalacturonate lyase (EC 4.2.2.9)	Exopolygalacturonate lyase (EC 4.2.2.9)

CRON 4.
kduI	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	* Vibrio shilonii AK1 Site: position = -164 score = 5.4894 sequence = TTTTAAAACGCAGTTTCAAAA Gene: VSAK1_02644: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -124 score = 5.3854 sequence = TTTTGAAACGATGTATCAATA Gene: PBPRB1731: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
oglP	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_02649: predicted oligogalacturonate TRAP transporter, substrate-binding subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1730: predicted oligogalacturonate TRAP transporter, substrate-binding subunit	predicted oligogalacturonate TRAP transporter, substrate-binding subunit
oglQ	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_02654: predicted oligogalacturonate TRAP transporter, small transmembrane subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1729: predicted oligogalacturonate TRAP transporter, small transmembrane subunit	predicted oligogalacturonate TRAP transporter, small transmembrane subunit
oglM	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_02659: predicted oligogalacturonate TRAP transporter, large transmembrane subunit	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1728: predicted oligogalacturonate TRAP transporter, large transmembrane subunit	predicted oligogalacturonate TRAP transporter, large transmembrane subunit
kdgR2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1 Gene: VSAK1_02664: Transcriptional regulator, IclR family	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1727: Transcriptional regulator, IclR family	Transcriptional regulator, IclR family

CRON 5.
VV21107	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -114 score = 5.81008 sequence = TATTGAAATGATGTTTCAAAA Site: position = -67 score = 5.48069 sequence = AAATAAAAAGATGTTTTAAAA Gene: VV21107: Arylsulfatase regulator	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Arylsulfatase regulator

CRON 6.
VV21108	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -115 score = 5.3116 sequence = TTTTAAAACATCTTTTTATTT Site: position = -68 score = 5.64514 sequence = TTTTGAAACATCATTTCAATA Gene: VV21108: Putative sulfatase (EC 3.1.6.-)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Putative sulfatase (EC 3.1.6.-)
VV21109	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21109: Arylsulfatase (EC 3.1.6.1)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Arylsulfatase (EC 3.1.6.1)

CRON 7.
ugl	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -127 score = 5.50465 sequence = AATTGAAAAGGTGTTTTGAAA Gene: VV21092: Unsaturated glucuronyl hydrolase, protein containing a thioredoxin domain	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Unsaturated glucuronyl hydrolase, protein containing a thioredoxin domain
VV21091	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21091: Putative 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Putative 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
cslA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV21090: Chondroitinase AC precursor (EC 4.2.2.5)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Chondroitinase AC precursor (EC 4.2.2.5)

CRON 8.
VV21106	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -162 score = 5.47539 sequence = TATTGAAACGCTTTTTTATAT Site: position = -56 score = 5.17252 sequence = AATTGAACCATCATTTCATTT Gene: VV21106: Arylsulfatase A	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Arylsulfatase A

CRON 9.
kduD	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -189 score = 5.23125 sequence = TTTTAAAATACCTTTTCATAA Site: position = -115 score = 6.0113 sequence = TTTTGAAACGTCTTTTCAAAA Gene: VV20914: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -194 score = 5.62217 sequence = TTTTAAAATGCCTTTTCAAAA Site: position = -121 score = 5.82453 sequence = TTTTAAAACGCCTTTTCAAAA Gene: VPA0077: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	* Vibrio shilonii AK1 Site: position = -195 score = 4.77501 sequence = TTTCAAAAAGGCTTTTCATAA Site: position = -119 score = 5.61664 sequence = AAATGAAACGGCATTTCAAAA Gene: VSAK1_20309: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -194 score = 5.56589 sequence = TTTTAAAAAGCCTTTTCAAAA Site: position = -121 score = 5.79029 sequence = TTTTAAAACGTTATTTCAAAA Gene: PBPRB1737: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
ygjV	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV20913: Permease of the major facilitator superfamily	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0078: Permease of the major facilitator superfamily	Vibrio shilonii AK1 Gene: VSAK1_20314: Permease of the major facilitator superfamily	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1736: Permease of the major facilitator superfamily	Permease of the major facilitator superfamily
kdgF	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV20912: Putative pectin degradation protein	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0079: Putative pectin degradation protein	Vibrio shilonii AK1 Gene: VSAK1_20419: Putative pectin degradation protein	Vibrio splendidus LGP32 Gene: VS_1244: Putative pectin degradation protein	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1735: Putative pectin degradation protein	Putative pectin degradation protein
spiX	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV20911: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0080: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Vibrio shilonii AK1 Gene: VSAK1_20319: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1734: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)	predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kdgK	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -81 score = 5.73786 sequence = AATTGAACCATTGTTTTAAAA Gene: VV20905: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -82 score = 5.39868 sequence = AAATGAACCGTTGTTTTATTT Gene: VPA0082: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio shilonii AK1 Gene: VSAK1_20349: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio splendidus LGP32 Gene: VS_1243: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -81 score = 5.41705 sequence = TTATGAACCGATGTTTTATTT Gene: PBPRB1733: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
eda	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV20904: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0083: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio shilonii AK1 Gene: VSAK1_20344: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio splendidus LGP32 Gene: VS_1242: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB1732: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)

CRON 10.
kdgR	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -234 score = 4.89379 sequence = AAGTGAACCGACGTTTTGGTT Site: position = -158 score = 5.8346 sequence = TTTTGAAAAGACGTTTCAAAA Site: position = -84 score = 5.358 sequence = TTATGAAAAGGTATTTTAAAA Gene: VV20915: 2-keto-3-deoxygluconate regulator KdgR	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -140 score = 5.7518 sequence = TTTTGAAAAGGCGTTTTAAAA Site: position = -67 score = 5.50876 sequence = TTTTGAAAAGGCATTTTAAAA Gene: VPA0076: 2-keto-3-deoxygluconate regulator KdgR	* Vibrio shilonii AK1 Site: position = -161 score = 5.44539 sequence = TTTTGAAATGCCGTTTCATTT Site: position = -85 score = 5.37113 sequence = TTATGAAAAGCCTTTTTGAAA Gene: VSAK1_20304: 2-keto-3-deoxygluconate regulator KdgR	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	* Photobacterium profundum SS9 Site: position = -158 score = 5.67621 sequence = TTTTGAAATAACGTTTTAAAA Site: position = -85 score = 5.60743 sequence = TTTTGAAAAGGCTTTTTAAAA Gene: PBPRB1738: 2-keto-3-deoxygluconate regulator KdgR	2-keto-3-deoxygluconate regulator KdgR

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog KdgR - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --