Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV20915
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Vibrionales
Statistics of regulated genes:
- Genes 14
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 40 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -189
Score: 5.2
Sequence: TTTTAAAATACCTTTTCATAA
Position: -115
Score: 6
Sequence: TTTTGAAACGTCTTTTCAAAA
Locus tag: VV20914
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VV20913
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: VV20912
Name: kdgF
Funciton: Putative pectin degradation protein
Locus tag: VV20911
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
VV20914
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
VV20913
ygjV
Permease of the major facilitator superfamily
VV20912
kdgF
Putative pectin degradation protein
VV20911
spiX
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Position: -162
Score: 5.5
Sequence: TATTGAAACGCTTTTTTATAT
Position: -56
Score: 5.2
Sequence: AATTGAACCATCATTTCATTT
Locus tag: VV21106
Name: null
Funciton: Arylsulfatase A
VV21106
Arylsulfatase A
Position: -115
Score: 5.3
Sequence: TTTTAAAACATCTTTTTATTT
Position: -68
Score: 5.6
Sequence: TTTTGAAACATCATTTCAATA
Locus tag: VV21108
Name: null
Funciton: Putative sulfatase (EC 3.1.6.-)
Locus tag: VV21109
Name: null
Funciton: Arylsulfatase (EC 3.1.6.1)
VV21108
Putative sulfatase (EC 3.1.6.-)
VV21109
Arylsulfatase (EC 3.1.6.1)
Position: -234
Score: 4.9
Sequence: AAGTGAACCGACGTTTTGGTT
Position: -158
Score: 5.8
Sequence: TTTTGAAAAGACGTTTCAAAA
Position: -84
Score: 5.4
Sequence: TTATGAAAAGGTATTTTAAAA
Locus tag: VV20915
Name: kdgR
Funciton: 2-keto-3-deoxygluconate regulator KdgR
VV20915
kdgR
2-keto-3-deoxygluconate regulator KdgR
Position: -114
Score: 5.8
Sequence: TATTGAAATGATGTTTCAAAA
Position: -67
Score: 5.5
Sequence: AAATAAAAAGATGTTTTAAAA
Locus tag: VV21107
Name: null
Funciton: Arylsulfatase regulator
VV21107
Arylsulfatase regulator
Position: -127
Score: 5.5
Sequence: AATTGAAAAGGTGTTTTGAAA
Locus tag: VV21092
Name: ugl
Funciton: Unsaturated glucuronyl hydrolase, protein containing a thioredoxin domain
Locus tag: VV21091
Name: VV21091
Funciton: Putative 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
Locus tag: VV21090
Name: cslA
Funciton: Chondroitinase AC precursor (EC 4.2.2.5)
VV21092
ugl
Unsaturated glucuronyl hydrolase, protein containing a thioredoxin domain
VV21091
VV21091
Putative 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase
VV21090
cslA
Chondroitinase AC precursor (EC 4.2.2.5)
Position: -81
Score: 5.7
Sequence: AATTGAACCATTGTTTTAAAA
Locus tag: VV20905
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: VV20904
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
VV20905
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
VV20904
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise