Regulon of KdgR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type:	Transcription factor
TF locus tag:	VPA0076
Regulator family:	IclR
Regulation mode:	repressor (activator)
Biological process:	Pectin and polygalacturonate utlization
Effector:	2-keto-3-deoxygluconate
Regulog:	KdgR - Vibrionales
Statistics of regulated genes:
- Genes	12
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 40 sites [see more]

Member of regulog collections

By trascription factor - KdgR
By taxonomy - Vibrionales
By TF family - IclR
By effector - 2-keto-3-deoxygluconate
By pathway - Pectin and polygalacturonate utlization

Regulated operons
	Locus Tag	Name	Function
Position: -194 Score: 5.6 Sequence: TTTTAAAATGCCTTTTCAAAA Position: -121 Score: 5.8 Sequence: TTTTAAAACGCCTTTTCAAAA Locus tag: VPA0077 Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) Locus tag: VPA0078 Name: ygjV Funciton: Permease of the major facilitator superfamily Locus tag: VPA0079 Name: kdgF Funciton: Putative pectin degradation protein Locus tag: VPA0080 Name: spiX Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
	VPA0077	kduD	2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
	VPA0078	ygjV	Permease of the major facilitator superfamily
	VPA0079	kdgF	Putative pectin degradation protein
	VPA0080	spiX	predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Position: -82 Score: 5.4 Sequence: AAATGAACCGTTGTTTTATTT Locus tag: VPA0082 Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) Locus tag: VPA0083 Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
	VPA0082	kdgK	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
	VPA0083	eda	2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -110 Score: 5.4 Sequence: AATTAAAACACCGTTTTAAAG Position: -20 Score: 5.5 Sequence: AAATAAAATGGTGTTTCAAAA Locus tag: VPA0085 Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM Locus tag: VPA0086 Name: pelX Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
	VPA0085	kdgM	Oligogalacturonate-specific porin protein KdgM
	VPA0086	pelX	Exopolygalacturonate lyase (EC 4.2.2.9)
Position: -140 Score: 5.8 Sequence: TTTTGAAAAGGCGTTTTAAAA Position: -67 Score: 5.5 Sequence: TTTTGAAAAGGCATTTTAAAA Locus tag: VPA0076 Name: kdgR Funciton: 2-keto-3-deoxygluconate regulator KdgR
	VPA0076	kdgR	2-keto-3-deoxygluconate regulator KdgR
Position: -93 Score: 5.5 Sequence: AAATGAACCGTTGTTTTGATT Position: -29 Score: 5.1 Sequence: AATTAAAACAGCGTTTCGAGG Locus tag: VPA0087 Name: togX1 Funciton: predicted oligogalacturonate transporter Locus tag: VPA0088 Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
	VPA0087	togX1	predicted oligogalacturonate transporter
	VPA0088	ogl	Oligogalacturonate lyase (EC 4.2.2.6)
Position: -130 Score: 5.2 Sequence: TTTTGAAACACCATTTTATTT Position: -40 Score: 5.2 Sequence: CTTTAAAACGGTGTTTTAATT Locus tag: VPA0084 Name: togX2 Funciton: predicted oligogalacturonate transporter
	VPA0084	togX2	predicted oligogalacturonate transporter

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