Regulon of KdgR in Vibrio parahaemolyticus RIMD 2210633
| Regulator type: | Transcription factor |
| TF locus tag: | VPA0076 |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 6 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - KdgR
- By taxonomy - Vibrionales
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -194
Score: 5.6 Sequence: TTTTAAAATGCCTTTTCAAAA
Position: -121
Score: 5.8 Sequence: TTTTAAAACGCCTTTTCAAAA
Locus tag: VPA0077
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VPA0078
Name: ygjV Funciton: Permease of the major facilitator superfamily
Locus tag: VPA0079
Name: kdgF Funciton: Putative pectin degradation protein
Locus tag: VPA0080
Name: spiX Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
|||
|
kduD
|
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
|
||
|
ygjV
|
Permease of the major facilitator superfamily
|
||
|
kdgF
|
Putative pectin degradation protein
|
||
|
spiX
|
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
|
||
|
Position: -82
Score: 5.4 Sequence: AAATGAACCGTTGTTTTATTT
Locus tag: VPA0082
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: VPA0083
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
|||
|
kdgK
|
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
|
||
|
eda
|
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
|
||
|
Position: -110
Score: 5.4 Sequence: AATTAAAACACCGTTTTAAAG
Position: -20
Score: 5.5 Sequence: AAATAAAATGGTGTTTCAAAA
Locus tag: VPA0085
Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: VPA0086
Name: pelX Funciton: Exopolygalacturonate lyase (EC 4.2.2.9) |
|||
|
kdgM
|
Oligogalacturonate-specific porin protein KdgM
|
||
|
pelX
|
Exopolygalacturonate lyase (EC 4.2.2.9)
|
||
|
Position: -140
Score: 5.8 Sequence: TTTTGAAAAGGCGTTTTAAAA
Position: -67
Score: 5.5 Sequence: TTTTGAAAAGGCATTTTAAAA
Locus tag: VPA0076
Name: kdgR Funciton: 2-keto-3-deoxygluconate regulator KdgR |
|||
|
kdgR
|
2-keto-3-deoxygluconate regulator KdgR
|
||
|
Position: -93
Score: 5.5 Sequence: AAATGAACCGTTGTTTTGATT
Position: -29
Score: 5.1 Sequence: AATTAAAACAGCGTTTCGAGG
Locus tag: VPA0087
Name: togX1 Funciton: predicted oligogalacturonate transporter
Locus tag: VPA0088
Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6) |
|||
|
togX1
|
predicted oligogalacturonate transporter
|
||
|
ogl
|
Oligogalacturonate lyase (EC 4.2.2.6)
|
||
|
Position: -130
Score: 5.2 Sequence: TTTTGAAACACCATTTTATTT
Position: -40
Score: 5.2 Sequence: CTTTAAAACGGTGTTTTAATT
Locus tag: VPA0084
Name: togX2 Funciton: predicted oligogalacturonate transporter |
|||
|
togX2
|
predicted oligogalacturonate transporter
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |