Regulon of KdgR in Photobacterium profundum SS9
| Regulator type: | Transcription factor |
| TF locus tag: | PBPRB1738 |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Regulog: | KdgR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - KdgR
- By taxonomy - Vibrionales
- By TF family - IclR
- By effector - 2-keto-3-deoxygluconate
- By pathway - Pectin and polygalacturonate utlization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -122
Score: 5.6 Sequence: AATTAAAACGCCGTTTCAATG
Position: -32
Score: 5.8 Sequence: AATTAAAACGGCGTTTTAAAA
Locus tag: PBPRB1726
Name: kdgM Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: PBPRB1725
Name: pelX Funciton: Exopolygalacturonate lyase (EC 4.2.2.9) |
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kdgM
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Oligogalacturonate-specific porin protein KdgM
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pelX
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Exopolygalacturonate lyase (EC 4.2.2.9)
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Position: -158
Score: 5.7 Sequence: TTTTGAAATAACGTTTTAAAA
Position: -85
Score: 5.6 Sequence: TTTTGAAAAGGCTTTTTAAAA
Locus tag: PBPRB1738
Name: kdgR Funciton: 2-keto-3-deoxygluconate regulator KdgR |
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kdgR
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2-keto-3-deoxygluconate regulator KdgR
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Position: -81
Score: 5.4 Sequence: TTATGAACCGATGTTTTATTT
Locus tag: PBPRB1733
Name: kdgK Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: PBPRB1732
Name: eda Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) |
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kdgK
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2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
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eda
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2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
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Position: -124
Score: 5.4 Sequence: TTTTGAAACGATGTATCAATA
Locus tag: PBPRB1731
Name: kduI Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: PBPRB1730
Name: oglP Funciton: predicted oligogalacturonate TRAP transporter, substrate-binding subunit
Locus tag: PBPRB1729
Name: oglQ Funciton: predicted oligogalacturonate TRAP transporter, small transmembrane subunit
Locus tag: PBPRB1728
Name: oglM Funciton: predicted oligogalacturonate TRAP transporter, large transmembrane subunit |
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kduI
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4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
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oglP
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predicted oligogalacturonate TRAP transporter, substrate-binding subunit
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oglQ
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predicted oligogalacturonate TRAP transporter, small transmembrane subunit
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oglM
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predicted oligogalacturonate TRAP transporter, large transmembrane subunit
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Position: -194
Score: 5.6 Sequence: TTTTAAAAAGCCTTTTCAAAA
Position: -121
Score: 5.8 Sequence: TTTTAAAACGTTATTTCAAAA
Locus tag: PBPRB1737
Name: kduD Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: PBPRB1736
Name: ygjV Funciton: Permease of the major facilitator superfamily
Locus tag: PBPRB1735
Name: kdgF Funciton: Putative pectin degradation protein
Locus tag: PBPRB1734
Name: spiX Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) |
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kduD
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2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
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ygjV
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Permease of the major facilitator superfamily
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kdgF
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Putative pectin degradation protein
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spiX
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predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
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Position: -149
Score: 5.5 Sequence: AAATGAACCGTTGTTTCGATT
Position: -85
Score: 5.3 Sequence: AATTAAAACGGCGTTTCGAGG
Locus tag: PBPRB1723
Name: togX1 Funciton: predicted oligogalacturonate transporter
Locus tag: PBPRB1722
Name: ogl Funciton: Oligogalacturonate lyase (EC 4.2.2.6) |
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togX1
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predicted oligogalacturonate transporter
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ogl
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Oligogalacturonate lyase (EC 4.2.2.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |