Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of KdgR in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRB1738
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Regulog: KdgR - Vibrionales
Statistics of regulated genes:
- Genes 15
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 40 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -122
Score: 5.6
Sequence: AATTAAAACGCCGTTTCAATG
Position: -32
Score: 5.8
Sequence: AATTAAAACGGCGTTTTAAAA
Locus tag: PBPRB1726
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: PBPRB1725
Name: pelX
Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
PBPRB1726
kdgM
Oligogalacturonate-specific porin protein KdgM
PBPRB1725
pelX
Exopolygalacturonate lyase (EC 4.2.2.9)
Position: -158
Score: 5.7
Sequence: TTTTGAAATAACGTTTTAAAA
Position: -85
Score: 5.6
Sequence: TTTTGAAAAGGCTTTTTAAAA
Locus tag: PBPRB1738
Name: kdgR
Funciton: 2-keto-3-deoxygluconate regulator KdgR
PBPRB1738
kdgR
2-keto-3-deoxygluconate regulator KdgR
Position: -81
Score: 5.4
Sequence: TTATGAACCGATGTTTTATTT
Locus tag: PBPRB1733
Name: kdgK
Funciton: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Locus tag: PBPRB1732
Name: eda
Funciton: 2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
PBPRB1733
kdgK
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
PBPRB1732
eda
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14)
Position: -124
Score: 5.4
Sequence: TTTTGAAACGATGTATCAATA
Locus tag: PBPRB1731
Name: kduI
Funciton: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Locus tag: PBPRB1730
Name: oglP
Funciton: predicted oligogalacturonate TRAP transporter, substrate-binding subunit
Locus tag: PBPRB1729
Name: oglQ
Funciton: predicted oligogalacturonate TRAP transporter, small transmembrane subunit
Locus tag: PBPRB1728
Name: oglM
Funciton: predicted oligogalacturonate TRAP transporter, large transmembrane subunit
PBPRB1731
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
PBPRB1730
oglP
predicted oligogalacturonate TRAP transporter, substrate-binding subunit
PBPRB1729
oglQ
predicted oligogalacturonate TRAP transporter, small transmembrane subunit
PBPRB1728
oglM
predicted oligogalacturonate TRAP transporter, large transmembrane subunit
Position: -194
Score: 5.6
Sequence: TTTTAAAAAGCCTTTTCAAAA
Position: -121
Score: 5.8
Sequence: TTTTAAAACGTTATTTCAAAA
Locus tag: PBPRB1737
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: PBPRB1736
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: PBPRB1735
Name: kdgF
Funciton: Putative pectin degradation protein
Locus tag: PBPRB1734
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
PBPRB1737
kduD
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
PBPRB1736
ygjV
Permease of the major facilitator superfamily
PBPRB1735
kdgF
Putative pectin degradation protein
PBPRB1734
spiX
predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
Position: -149
Score: 5.5
Sequence: AAATGAACCGTTGTTTCGATT
Position: -85
Score: 5.3
Sequence: AATTAAAACGGCGTTTCGAGG
Locus tag: PBPRB1723
Name: togX1
Funciton: predicted oligogalacturonate transporter
Locus tag: PBPRB1722
Name: ogl
Funciton: Oligogalacturonate lyase (EC 4.2.2.6)
PBPRB1723
togX1
predicted oligogalacturonate transporter
PBPRB1722
ogl
Oligogalacturonate lyase (EC 4.2.2.6)
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