Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing spiX gene

Properties
Regulog: KdgR - Vibrionales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Built upon 40 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -194
Score: 5.56589
Sequence: TTTTAAAAAGCCTTTTCAAAA
Position: -121
Score: 5.79029
Sequence: TTTTAAAACGTTATTTCAAAA
Locus tag: PBPRB1737
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: PBPRB1736
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: PBPRB1735
Name: kdgF
Funciton: Putative pectin degradation protein
Locus tag: PBPRB1734
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD-ygjV-kdgF-spiX -194 5.6 TTTTAAAAAGCCTTTTCAAAA PBPRB1737
-121 5.8 TTTTAAAACGTTATTTCAAAA
Vibrio parahaemolyticus RIMD 2210633
Position: -194
Score: 5.62217
Sequence: TTTTAAAATGCCTTTTCAAAA
Position: -121
Score: 5.82453
Sequence: TTTTAAAACGCCTTTTCAAAA
Locus tag: VPA0077
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VPA0078
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: VPA0079
Name: kdgF
Funciton: Putative pectin degradation protein
Locus tag: VPA0080
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD-ygjV-kdgF-spiX -194 5.6 TTTTAAAATGCCTTTTCAAAA VPA0077
-121 5.8 TTTTAAAACGCCTTTTCAAAA
Vibrio shilonii AK1
Position: -195
Score: 4.77501
Sequence: TTTCAAAAAGGCTTTTCATAA
Position: -119
Score: 5.61664
Sequence: AAATGAAACGGCATTTCAAAA
Locus tag: VSAK1_20309
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VSAK1_20314
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: VSAK1_20319
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD-ygjV-spiX -195 4.8 TTTCAAAAAGGCTTTTCATAA VSAK1_20309
-119 5.6 AAATGAAACGGCATTTCAAAA
Vibrio vulnificus CMCP6
Position: -189
Score: 5.23125
Sequence: TTTTAAAATACCTTTTCATAA
Position: -115
Score: 6.0113
Sequence: TTTTGAAACGTCTTTTCAAAA
Locus tag: VV20914
Name: kduD
Funciton: 2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125)
Locus tag: VV20913
Name: ygjV
Funciton: Permease of the major facilitator superfamily
Locus tag: VV20912
Name: kdgF
Funciton: Putative pectin degradation protein
Locus tag: VV20911
Name: spiX
Funciton: predicted 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17)
kduD-ygjV-kdgF-spiX -189 5.2 TTTTAAAATACCTTTTCATAA VV20914
-115 6 TTTTGAAACGTCTTTTCAAAA