Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing pelX gene

Properties
Regulog: KdgR - Vibrionales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Built upon 40 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -122
Score: 5.56897
Sequence: AATTAAAACGCCGTTTCAATG
Position: -32
Score: 5.8477
Sequence: AATTAAAACGGCGTTTTAAAA
Locus tag: PBPRB1726
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: PBPRB1725
Name: pelX
Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
kdgM-pelX -122 5.6 AATTAAAACGCCGTTTCAATG PBPRB1726
-32 5.8 AATTAAAACGGCGTTTTAAAA
Vibrio parahaemolyticus RIMD 2210633
Position: -110
Score: 5.44752
Sequence: AATTAAAACACCGTTTTAAAG
Position: -20
Score: 5.53499
Sequence: AAATAAAATGGTGTTTCAAAA
Locus tag: VPA0085
Name: kdgM
Funciton: Oligogalacturonate-specific porin protein KdgM
Locus tag: VPA0086
Name: pelX
Funciton: Exopolygalacturonate lyase (EC 4.2.2.9)
kdgM-pelX -110 5.4 AATTAAAACACCGTTTTAAAG VPA0085
-20 5.5 AAATAAAATGGTGTTTCAAAA