Regulon of TyrR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_01477 |
| Regulator family: | TyrR |
| Regulation mode: | activator (repressor) |
| Biological process: | Aromatic amino acid metabolism |
| Effector: | Tyrosine; Phenylalanine |
| Regulog: | TyrR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - TyrR
- By taxonomy - Vibrionales
- By TF family - TyrR
- By effector - Tyrosine
- By effector - Phenylalanine
- By pathway - Aromatic amino acid metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -165
Score: 5.1 Sequence: CTGTAAACACACTTTTACAC
Position: -144
Score: 4.6 Sequence: AGATAAATTTATGTTTACAT
Locus tag: VSAK1_15307
Name: tyrP Funciton: tyrosine-specific transport protein |
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tyrP
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tyrosine-specific transport protein
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Position: -136
Score: 5.2 Sequence: GTGTATAAAAATAAATACAC
Locus tag: VSAK1_16422
Name: COG0733 Funciton: Predicted 4-Hydroxyphenylpyruvate transporter, SNF family |
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COG0733
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Predicted 4-Hydroxyphenylpyruvate transporter, SNF family
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Position: -111
Score: 5.1 Sequence: GTGTAAAATTTGAATTACAT
Locus tag: VSAK1_10508
Name: COG1284 Funciton: Conserved hypothetical protein |
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COG1284
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Conserved hypothetical protein
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Position: -169
Score: 4.8 Sequence: ATGTAGCAAAAATGTTACAA
Locus tag: VSAK1_19029
Name: hpd Funciton: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
Locus tag: VSAK1_19034
Name: hmgA Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Locus tag: VSAK1_19039
Name: hmgC Funciton: Fumarylacetoacetase (EC 3.7.1.2)
Locus tag: VSAK1_19044
Name: hmgB Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2) |
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hpd
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4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
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hmgA
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Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
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hmgC
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Fumarylacetoacetase (EC 3.7.1.2)
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hmgB
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Maleylacetoacetate isomerase (EC 5.2.1.2)
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Position: -136
Score: 5.5 Sequence: GTGTAACAATTTATTTACAT
Locus tag: VSAK1_21594
Name: acsA Funciton: Acetoacetyl-CoA synthetase (EC 6.2.1.16) |
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acsA
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Acetoacetyl-CoA synthetase (EC 6.2.1.16)
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Position: -109
Score: 6.3 Sequence: ATGTAAATAAATTGTTACAC
Locus tag: VSAK1_21599
Name: phhA Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: VSAK1_21604
Name: phhB Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) |
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phhA
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Phenylalanine-4-hydroxylase (EC 1.14.16.1)
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phhB
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Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
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Position: -141
Score: 6 Sequence: GTGTAAAATTATATTTACAT
Position: -28
Score: 6.4 Sequence: GTGTAAAATAATATTTACAG
Locus tag: VSAK1_14082
Name: aroF Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54)
Locus tag: VSAK1_14087
Name: tyrA Funciton: Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) |
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aroF
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2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (EC 2.5.1.54)
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tyrA
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Chorismate mutase I (EC 5.4.99.5) / Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43)
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Position: -154
Score: 5.9 Sequence: GTGTAAACTAAAGATTACAC
Locus tag: VSAK1_01272
Name: COG0733 Funciton: Predicted 4-Hydroxyphenylpyruvate transporter, SNF family |
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COG0733
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Predicted 4-Hydroxyphenylpyruvate transporter, SNF family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |