Regulon of LiuR in Vibrio shilonii AK1

Properties
Regulator type:	Transcription factor
TF locus tag:	VSAK1_15262
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Vibrionales
Statistics of regulated genes:
- Genes	16
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 38 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Vibrionales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -94 Score: 6 Sequence: GTTTACGTTTACGTCAAC Locus tag: VSAK1_15217 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	VSAK1_15217	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -74 Score: 6 Sequence: GTTGACGTAAACGTAAAC Locus tag: VSAK1_15212 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: VSAK1_15207 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	VSAK1_15212	etfB	Electron transfer flavoprotein, beta subunit
	VSAK1_15207	etfA	Electron transfer flavoprotein, alpha subunit
Position: -107 Score: 5.9 Sequence: CTTTACGTTTACGTAAAT Locus tag: VSAK1_15257 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: VSAK1_15252 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: VSAK1_15247 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: VSAK1_15242 Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: VSAK1_15237 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: VSAK1_15232 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: VSAK1_15227 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: VSAK1_15222 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	VSAK1_15257	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	VSAK1_15252	ivdB	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
	VSAK1_15247	ivdC	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	VSAK1_15242	ivdD	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
	VSAK1_15237	ivdE	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	VSAK1_15232	ivdF	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	VSAK1_15227	ivdF	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	VSAK1_15222	ivdG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -155 Score: 5.9 Sequence: ATTTACGTAAACGTAAAG Locus tag: VSAK1_15262 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: VSAK1_15267 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Locus tag: VSAK1_15272 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: VSAK1_15277 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: VSAK1_15282 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	VSAK1_15262	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	VSAK1_15267	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
	VSAK1_15272	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	VSAK1_15277	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	VSAK1_15282	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LiuR in Vibrio shilonii AK1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --