Regulon of LiuR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_15262 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Regulog: | LiuR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 16 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Vibrionales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -94
Score: 6 Sequence: GTTTACGTTTACGTCAAC
Locus tag: VSAK1_15217
Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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etfD
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Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
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Position: -74
Score: 6 Sequence: GTTGACGTAAACGTAAAC
Locus tag: VSAK1_15212
Name: etfB Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: VSAK1_15207
Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit |
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etfB
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Electron transfer flavoprotein, beta subunit
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etfA
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Electron transfer flavoprotein, alpha subunit
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Position: -107
Score: 5.9 Sequence: CTTTACGTTTACGTAAAT
Locus tag: VSAK1_15257
Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VSAK1_15252
Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VSAK1_15247
Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VSAK1_15242
Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VSAK1_15237
Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VSAK1_15232
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15227
Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15222
Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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ivdA
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3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
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ivdB
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Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
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ivdC
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Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
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ivdD
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3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
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ivdE
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Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdF
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3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
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ivdG
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3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
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Position: -155
Score: 5.9 Sequence: ATTTACGTAAACGTAAAG
Locus tag: VSAK1_15262
Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: VSAK1_15267
Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: VSAK1_15272
Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: VSAK1_15277
Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: VSAK1_15282
Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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liuR
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Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
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liuA
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Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
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liuB
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Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
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liuC
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Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
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liuE
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Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |