Regulog LiuR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Branched-chain amino acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LiuR
- By taxonomy - Vibrionales
- By TF family - MerR
- By pathway - Branched-chain amino acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | 16 | 4 |
| Vibrio harveyi ATCC BAA-1116 | 15 | 4 |
| Vibrio parahaemolyticus RIMD 2210633 | 35 | 8 |
| Vibrio shilonii AK1 | 16 | 4 |
| Vibrio splendidus LGP32 | ||
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | 11 | 4 |
| Photobacterium profundum SS9 | 17 | 4 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| etfD |
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Vibrio vulnificus CMCP6 Site: position = -82 score = 6.00939 sequence = GTTTACGTTTACGTCAAC Gene: VV20476: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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Vibrio harveyi ATCC BAA-1116 Site: position = -101 score = 6.00939 sequence = GTTTACGTTTACGTCAAC Gene: VIBHAR_05546: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*2
Vibrio parahaemolyticus RIMD 2210633 Site: position = -86 score = 4.76933 sequence = ATTCACGTTTACGTTAAC Gene: VPA0643: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Site: position = -77 score = 5.08961 sequence = CTTTACGTTTGCATCAAC Gene: VPA1155: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Vibrio shilonii AK1 Site: position = -94 score = 6.00939 sequence = GTTTACGTTTACGTCAAC Gene: VSAK1_15217: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
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Vibrio angustum S14 Site: position = -55 score = 5.59189 sequence = ATTTACGTTTACGTCAAC Gene: VAS14_11634: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Photobacterium profundum SS9 Site: position = -66 score = 5.59189 sequence = ATTTACGTTTACGTCAAC Gene: PBPRB1099: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
| CRON 2. | |||||||||||
| livG |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -110 score = 5.59189 sequence = ATTGACGTTTACGTAAAC Gene: VPA1153: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) |
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Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) |
| fadD |
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Gene: VPA1152: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
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Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) |
| livH |
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Gene: VPA1151: Branched-chain amino acid transport permease protein LivH (TC 3.A.1.4.1) |
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Branched-chain amino acid transport permease protein LivH (TC 3.A.1.4.1) |
| livM |
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Gene: VPA1150: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) |
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Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) |
| livK |
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Gene: VPA1149: Branched-chain amino acid transport substrate-binding protein LivK (TC 3.A.1.4.1) |
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Branched-chain amino acid transport substrate-binding protein LivK (TC 3.A.1.4.1) |
| livF |
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Gene: VPA1148: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) |
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Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) |
| CRON 3. | |||||||||||
| etfB |
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*
Vibrio vulnificus CMCP6 Site: position = -156 score = 6.00939 sequence = GTTGACGTAAACGTAAAC Gene: VV20474: Electron transfer flavoprotein, beta subunit |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -193 score = 6.00939 sequence = GTTGACGTAAACGTAAAC Gene: VIBHAR_05548: Electron transfer flavoprotein, beta subunit |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -79 score = 5.08961 sequence = GTTGATGCAAACGTAAAG Gene: VPA1156: Electron transfer flavoprotein, beta subunit |
*
Vibrio shilonii AK1 Site: position = -74 score = 6.00939 sequence = GTTGACGTAAACGTAAAC Gene: VSAK1_15212: Electron transfer flavoprotein, beta subunit |
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Vibrio angustum S14 Site: position = -94 score = 5.59189 sequence = GTTGACGTAAACGTAAAT Gene: VAS14_11639: Electron transfer flavoprotein, beta subunit |
*
Photobacterium profundum SS9 Site: position = -168 score = 5.59189 sequence = GTTGACGTAAACGTAAAT Gene: PBPRB1098: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
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Gene: VV20473: Electron transfer flavoprotein, alpha subunit |
Gene: VIBHAR_05549: Electron transfer flavoprotein, alpha subunit |
Gene: VPA1157: Electron transfer flavoprotein, alpha subunit |
Gene: VSAK1_15207: Electron transfer flavoprotein, alpha subunit |
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Gene: VAS14_11644: Electron transfer flavoprotein, alpha subunit |
Gene: PBPRB1097: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| CRON 4. | |||||||||||
| liuR |
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*
Vibrio vulnificus CMCP6 Site: position = -112 score = 5.92222 sequence = ATTTACGTAAACGTAAAG Site: position = -141 score = 5.67144 sequence = CTTGACGTTTACGTAAGC Gene: VV20495: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -141 score = 5.92222 sequence = ATTTACGTAAACGTAAAG Site: position = -170 score = 5.67144 sequence = CTTGACGTTTACGTAAGC Gene: VIBHAR_05481: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*2
Vibrio parahaemolyticus RIMD 2210633 Site: position = -129 score = 5.67144 sequence = CTTGACGTTTACGTAAGC Gene: VPA0619: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Site: position = -66 score = 5.35481 sequence = GTTTACTTTAACGTTAAC Site: position = -166 score = 5.7845 sequence = ATTTACGTTAACGTCAAG Site: position = -195 score = 5.07331 sequence = GTTGACGTTTACGTCATA Gene: VPA1124: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Vibrio shilonii AK1 Site: position = -155 score = 5.92222 sequence = ATTTACGTAAACGTAAAG Gene: VSAK1_15262: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
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Vibrio angustum S14 Site: position = -115 score = 5.39907 sequence = ATTTACGTAAACGTTAAG Gene: VAS14_10939: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
*
Photobacterium profundum SS9 Site: position = -203 score = 5.67144 sequence = CTTGACGTTTACGTAAGC Site: position = -174 score = 5.92222 sequence = ATTTACGTAAACGTAAAG Gene: PBPRB1113: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family |
| liuA |
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Gene: VV20496: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: VIBHAR_05480: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0618: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Gene: VPA1125: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: VSAK1_15267: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
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Gene: VAS14_10934: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Gene: PBPRB1114: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) |
| liuB |
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Gene: VV20497: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: VIBHAR_05479: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0617: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Gene: VPA1126: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Gene: VSAK1_15272: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
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Gene: VAS14_10929: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
2
Photobacterium profundum SS9 Gene: PBPRB1116: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Gene: PBPRB1115: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) |
| liuC |
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Gene: VV20498: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: VIBHAR_05478: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0616: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Gene: VPA1127: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Gene: VSAK1_15277: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
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Gene: VAS14_10924: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
2
Photobacterium profundum SS9 Gene: PBPRB1118: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Gene: PBPRB1117: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
Methylglutaconyl-CoA hydratase (EC 4.2.1.18) |
| liuE |
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2
Vibrio vulnificus CMCP6 Gene: VV20500: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Gene: VV20499: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: VIBHAR_05477: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0615: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) Gene: VPA1129: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: VSAK1_15282: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
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Gene: VAS14_10919: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Gene: PBPRB1119: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) |
| liuD |
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Gene: VPA1128: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
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Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) |
| CRON 5. | |||||||||||
| ivdA |
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Vibrio vulnificus CMCP6 Site: position = -72 score = 5.67144 sequence = GCTTACGTAAACGTCAAG Site: position = -101 score = 5.92222 sequence = CTTTACGTTTACGTAAAT Gene: VV20494: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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Vibrio harveyi ATCC BAA-1116 Site: position = -149 score = 5.67144 sequence = GCTTACGTAAACGTCAAG Site: position = -178 score = 5.92222 sequence = CTTTACGTTTACGTAAAT Gene: VIBHAR_05482: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*2
Vibrio parahaemolyticus RIMD 2210633 Site: position = -147 score = 5.67144 sequence = GCTTACGTAAACGTCAAG Gene: VPA0620: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Site: position = -161 score = 5.35481 sequence = GTTAACGTTAAAGTAAAC Site: position = -32 score = 5.07331 sequence = TATGACGTAAACGTCAAC Site: position = -61 score = 5.7845 sequence = CTTGACGTTAACGTAAAT Gene: VPA1123: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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Vibrio shilonii AK1 Site: position = -107 score = 5.92222 sequence = CTTTACGTTTACGTAAAT Gene: VSAK1_15257: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
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Vibrio angustum S14 Site: position = -107 score = 5.39907 sequence = CTTAACGTTTACGTAAAT Gene: VAS14_10944: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
*
Photobacterium profundum SS9 Site: position = -117 score = 5.92222 sequence = CTTTACGTTTACGTAAAT Site: position = -88 score = 5.67144 sequence = GCTTACGTAAACGTCAAG Gene: PBPRB1112: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) |
| ivdB |
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Gene: VV20493: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: VIBHAR_05483: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0621: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Gene: VPA1122: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: VSAK1_15252: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
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Gene: PBPRB1111: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
| ivdC |
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Gene: VV20492: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: VIBHAR_05484: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0622: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Gene: VPA1121: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Gene: VSAK1_15247: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
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Gene: PBPRB1110: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) |
| ivdD |
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Gene: VV20491: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: VIBHAR_05485: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0623: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Gene: VPA1120: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
Gene: VSAK1_15242: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
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Gene: PBPRB1109: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) |
| ivdE |
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Gene: VV20490: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: VIBHAR_05486: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0624: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Gene: VPA1119: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: VSAK1_15237: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
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Gene: VAS14_10949: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Gene: PBPRB1108: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) |
| ivdF |
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Gene: VV20489: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
Gene: VIBHAR_05487: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1118: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Gene: VPA0625: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
2
Vibrio shilonii AK1 Gene: VSAK1_15232: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Gene: VSAK1_15227: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
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Gene: PBPRB1107: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) |
| ivdG |
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Gene: VV20488: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: VIBHAR_05488: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
2
Vibrio parahaemolyticus RIMD 2210633 Gene: VPA1117: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) Gene: VPA0626: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: VSAK1_15222: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
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Gene: VAS14_10954: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Gene: PBPRB1106: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |