Regulon of LiuR in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type:	Transcription factor
TF locus tag:	VIBHAR_05481
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Vibrionales
Statistics of regulated genes:
- Genes	15
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 38 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Vibrionales
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -101 Score: 6 Sequence: GTTTACGTTTACGTCAAC Locus tag: VIBHAR_05546 Name: etfD Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
	VIBHAR_05546	etfD	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -193 Score: 6 Sequence: GTTGACGTAAACGTAAAC Locus tag: VIBHAR_05548 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: VIBHAR_05549 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit
	VIBHAR_05548	etfB	Electron transfer flavoprotein, beta subunit
	VIBHAR_05549	etfA	Electron transfer flavoprotein, alpha subunit
Position: -170 Score: 5.7 Sequence: CTTGACGTTTACGTAAGC Position: -141 Score: 5.9 Sequence: ATTTACGTAAACGTAAAG Locus tag: VIBHAR_05481 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family Locus tag: VIBHAR_05480 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10) Locus tag: VIBHAR_05479 Name: liuB Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Locus tag: VIBHAR_05478 Name: liuC Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18) Locus tag: VIBHAR_05477 Name: liuE Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
	VIBHAR_05481	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	VIBHAR_05480	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
	VIBHAR_05479	liuB	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
	VIBHAR_05478	liuC	Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
	VIBHAR_05477	liuE	Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -178 Score: 5.9 Sequence: CTTTACGTTTACGTAAAT Position: -149 Score: 5.7 Sequence: GCTTACGTAAACGTCAAG Locus tag: VIBHAR_05482 Name: ivdA Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16) Locus tag: VIBHAR_05483 Name: ivdB Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) Locus tag: VIBHAR_05484 Name: ivdC Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) Locus tag: VIBHAR_05485 Name: ivdD Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) Locus tag: VIBHAR_05486 Name: ivdE Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) Locus tag: VIBHAR_05487 Name: ivdF Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) Locus tag: VIBHAR_05488 Name: ivdG Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
	VIBHAR_05482	ivdA	3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
	VIBHAR_05483	ivdB	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
	VIBHAR_05484	ivdC	Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
	VIBHAR_05485	ivdD	3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
	VIBHAR_05486	ivdE	Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
	VIBHAR_05487	ivdF	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
	VIBHAR_05488	ivdG	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)

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