Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV20495
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Vibrionales
Statistics of regulated genes:
- Genes 16
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 38 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -82
Score: 6
Sequence: GTTTACGTTTACGTCAAC
Locus tag: VV20476
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
VV20476
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -156
Score: 6
Sequence: GTTGACGTAAACGTAAAC
Locus tag: VV20474
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: VV20473
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
VV20474
etfB
Electron transfer flavoprotein, beta subunit
VV20473
etfA
Electron transfer flavoprotein, alpha subunit
Position: -101
Score: 5.9
Sequence: CTTTACGTTTACGTAAAT
Position: -72
Score: 5.7
Sequence: GCTTACGTAAACGTCAAG
Locus tag: VV20494
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VV20493
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VV20492
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VV20491
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VV20490
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VV20489
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VV20488
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
VV20494
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
VV20493
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
VV20492
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
VV20491
ivdD
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
VV20490
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
VV20489
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
VV20488
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -141
Score: 5.7
Sequence: CTTGACGTTTACGTAAGC
Position: -112
Score: 5.9
Sequence: ATTTACGTAAACGTAAAG
Locus tag: VV20495
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: VV20496
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: VV20497
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: VV20498
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: VV20499
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Locus tag: VV20500
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
VV20495
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
VV20496
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
VV20497
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
VV20498
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
VV20499
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
VV20500
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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