Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ivdE gene

Properties
Regulog: LiuR - Vibrionales
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Built upon 38 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Photobacterium profundum SS9
Position: -117
Score: 5.92222
Sequence: CTTTACGTTTACGTAAAT
Position: -88
Score: 5.67144
Sequence: GCTTACGTAAACGTCAAG
Locus tag: PBPRB1112
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: PBPRB1111
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: PBPRB1110
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: PBPRB1109
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: PBPRB1108
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: PBPRB1107
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: PBPRB1106
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -117 5.9 CTTTACGTTTACGTAAAT PBPRB1112
-88 5.7 GCTTACGTAAACGTCAAG
Vibrio angustum S14
Position: -107
Score: 5.39907
Sequence: CTTAACGTTTACGTAAAT
Locus tag: VAS14_10944
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VAS14_10949
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VAS14_10954
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdE-ivdG -107 5.4 CTTAACGTTTACGTAAAT VAS14_10944
Vibrio harveyi ATCC BAA-1116
Position: -178
Score: 5.92222
Sequence: CTTTACGTTTACGTAAAT
Position: -149
Score: 5.67144
Sequence: GCTTACGTAAACGTCAAG
Locus tag: VIBHAR_05482
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VIBHAR_05483
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VIBHAR_05484
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VIBHAR_05485
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VIBHAR_05486
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VIBHAR_05487
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VIBHAR_05488
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -178 5.9 CTTTACGTTTACGTAAAT VIBHAR_05482
-149 5.7 GCTTACGTAAACGTCAAG
Vibrio parahaemolyticus RIMD 2210633
Position: -161
Score: 5.35481
Sequence: GTTAACGTTAAAGTAAAC
Position: -61
Score: 5.7845
Sequence: CTTGACGTTAACGTAAAT
Position: -32
Score: 5.07331
Sequence: TATGACGTAAACGTCAAC
Locus tag: VPA1123
Name: ivdA2
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VPA1122
Name: ivdB2
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VPA1121
Name: ivdC2
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VPA1120
Name: ivdD2
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VPA1119
Name: ivdE2
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VPA1118
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VPA1117
Name: ivdG2
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA2-ivdB2-ivdC2-ivdD2-ivdE2-ivdF-ivdG2 -161 5.4 GTTAACGTTAAAGTAAAC VPA1123
-61 5.8 CTTGACGTTAACGTAAAT
-32 5.1 TATGACGTAAACGTCAAC
Vibrio shilonii AK1
Position: -107
Score: 5.92222
Sequence: CTTTACGTTTACGTAAAT
Locus tag: VSAK1_15257
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VSAK1_15252
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VSAK1_15247
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VSAK1_15242
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VSAK1_15237
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VSAK1_15232
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15227
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VSAK1_15222
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdF-ivdG -107 5.9 CTTTACGTTTACGTAAAT VSAK1_15257
Vibrio vulnificus CMCP6
Position: -101
Score: 5.92222
Sequence: CTTTACGTTTACGTAAAT
Position: -72
Score: 5.67144
Sequence: GCTTACGTAAACGTCAAG
Locus tag: VV20494
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VV20493
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VV20492
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VV20491
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VV20490
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VV20489
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VV20488
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
ivdA-ivdB-ivdC-ivdD-ivdE-ivdF-ivdG -101 5.9 CTTTACGTTTACGTAAAT VV20494
-72 5.7 GCTTACGTAAACGTCAAG