Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VPA0619, VPA1124
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Vibrionales
Statistics of regulated genes:
- Genes 35
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 38 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -86
Score: 4.8
Sequence: ATTCACGTTTACGTTAAC
Locus tag: VPA0643
Name: etfD2
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
VPA0643
etfD2
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -77
Score: 5.1
Sequence: CTTTACGTTTGCATCAAC
Locus tag: VPA1155
Name: etfD1
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
VPA1155
etfD1
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -110
Score: 5.6
Sequence: ATTGACGTTTACGTAAAC
Locus tag: VPA1153
Name: livG
Funciton: Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
Locus tag: VPA1152
Name: fadD
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Locus tag: VPA1151
Name: livH
Funciton: Branched-chain amino acid transport permease protein LivH (TC 3.A.1.4.1)
Locus tag: VPA1150
Name: livM
Funciton: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
Locus tag: VPA1149
Name: livK
Funciton: Branched-chain amino acid transport substrate-binding protein LivK (TC 3.A.1.4.1)
Locus tag: VPA1148
Name: livF
Funciton: Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
VPA1153
livG
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)
VPA1152
fadD
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
VPA1151
livH
Branched-chain amino acid transport permease protein LivH (TC 3.A.1.4.1)
VPA1150
livM
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
VPA1149
livK
Branched-chain amino acid transport substrate-binding protein LivK (TC 3.A.1.4.1)
VPA1148
livF
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1)
Position: -79
Score: 5.1
Sequence: GTTGATGCAAACGTAAAG
Locus tag: VPA1156
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: VPA1157
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
VPA1156
etfB
Electron transfer flavoprotein, beta subunit
VPA1157
etfA
Electron transfer flavoprotein, alpha subunit
Position: -147
Score: 5.7
Sequence: GCTTACGTAAACGTCAAG
Locus tag: VPA0620
Name: ivdA1
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VPA0621
Name: ivdB1
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VPA0622
Name: ivdC1
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VPA0623
Name: ivdD1
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VPA0624
Name: ivdE1
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VPA0625
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VPA0626
Name: ivdG1
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
VPA0620
ivdA1
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
VPA0621
ivdB1
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
VPA0622
ivdC1
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
VPA0623
ivdD1
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
VPA0624
ivdE1
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
VPA0625
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
VPA0626
ivdG1
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -161
Score: 5.4
Sequence: GTTAACGTTAAAGTAAAC
Position: -61
Score: 5.8
Sequence: CTTGACGTTAACGTAAAT
Position: -32
Score: 5.1
Sequence: TATGACGTAAACGTCAAC
Locus tag: VPA1123
Name: ivdA2
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: VPA1122
Name: ivdB2
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: VPA1121
Name: ivdC2
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: VPA1120
Name: ivdD2
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: VPA1119
Name: ivdE2
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: VPA1118
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: VPA1117
Name: ivdG2
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
VPA1123
ivdA2
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
VPA1122
ivdB2
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
VPA1121
ivdC2
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
VPA1120
ivdD2
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
VPA1119
ivdE2
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
VPA1118
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
VPA1117
ivdG2
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Position: -195
Score: 5.1
Sequence: GTTGACGTTTACGTCATA
Position: -166
Score: 5.8
Sequence: ATTTACGTTAACGTCAAG
Position: -66
Score: 5.4
Sequence: GTTTACTTTAACGTTAAC
Locus tag: VPA1124
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: VPA1125
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: VPA1126
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: VPA1127
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: VPA1128
Name: liuD
Funciton: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Locus tag: VPA1129
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
VPA1124
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
VPA1125
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
VPA1126
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
VPA1127
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
VPA1128
liuD
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
VPA1129
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -129
Score: 5.7
Sequence: CTTGACGTTTACGTAAGC
Locus tag: VPA0619
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: VPA0618
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: VPA0617
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: VPA0616
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: VPA0615
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
VPA0619
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
VPA0618
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
VPA0617
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
VPA0616
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
VPA0615
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
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