Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LiuR in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRB1113
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Regulog: LiuR - Vibrionales
Statistics of regulated genes:
- Genes 17
- Operons 4
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 38 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -66
Score: 5.6
Sequence: ATTTACGTTTACGTCAAC
Locus tag: PBPRB1099
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
PBPRB1099
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -168
Score: 5.6
Sequence: GTTGACGTAAACGTAAAT
Locus tag: PBPRB1098
Name: etfB
Funciton: Electron transfer flavoprotein, beta subunit
Locus tag: PBPRB1097
Name: etfA
Funciton: Electron transfer flavoprotein, alpha subunit
PBPRB1098
etfB
Electron transfer flavoprotein, beta subunit
PBPRB1097
etfA
Electron transfer flavoprotein, alpha subunit
Position: -203
Score: 5.7
Sequence: CTTGACGTTTACGTAAGC
Position: -174
Score: 5.9
Sequence: ATTTACGTAAACGTAAAG
Locus tag: PBPRB1113
Name: liuR
Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Locus tag: PBPRB1114
Name: liuA
Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Locus tag: PBPRB1115
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PBPRB1116
Name: liuB
Funciton: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Locus tag: PBPRB1117
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PBPRB1118
Name: liuC
Funciton: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
Locus tag: PBPRB1119
Name: liuE
Funciton: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
PBPRB1113
liuR
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
PBPRB1114
liuA
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
PBPRB1115
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
PBPRB1116
liuB
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
PBPRB1117
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
PBPRB1118
liuC
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
PBPRB1119
liuE
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
Position: -117
Score: 5.9
Sequence: CTTTACGTTTACGTAAAT
Position: -88
Score: 5.7
Sequence: GCTTACGTAAACGTCAAG
Locus tag: PBPRB1112
Name: ivdA
Funciton: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Locus tag: PBPRB1111
Name: ivdB
Funciton: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
Locus tag: PBPRB1110
Name: ivdC
Funciton: Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
Locus tag: PBPRB1109
Name: ivdD
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Locus tag: PBPRB1108
Name: ivdE
Funciton: Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
Locus tag: PBPRB1107
Name: ivdF
Funciton: 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
Locus tag: PBPRB1106
Name: ivdG
Funciton: 3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
PBPRB1112
ivdA
3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
PBPRB1111
ivdB
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)
PBPRB1110
ivdC
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12)
PBPRB1109
ivdD
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
PBPRB1108
ivdE
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17)
PBPRB1107
ivdF
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)
PBPRB1106
ivdG
3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation] (EC 1.1.1.35)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise