Regulon of NagC in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_10648 |
| Regulator family: | ROK |
| Regulation mode: | repressor (activator) |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Regulog: | NagC - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 14 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NagC
- By taxonomy - Vibrionales
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
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Position: -155
Score: 4.8 Sequence: CTTATTTTGCATTGTGAACTATT
Locus tag: VSAK1_06295
Name: tfoX1 Funciton: DNA transformation protein TfoX1 (Sxy) |
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tfoX1
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DNA transformation protein TfoX1 (Sxy)
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Position: -88
Score: 5 Sequence: CTTAATTTTTATTAGAAATTTAC
Locus tag: VSAK1_24585
Name: glmU Funciton: N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157) |
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glmU
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N-acetylglucosamine-1-phosphate uridyltransferase (EC 2.7.7.23) / Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)
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Position: -231
Score: 4.7 Sequence: CTTATTTCAAAACGATAATTTAG
Locus tag: VSAK1_04037
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VSAK1_04042
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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Position: -267
Score: 4.5 Sequence: CTTGATTGAATGCGAAAAATAAG
Locus tag: VSAK1_05950
Name: gapB Funciton: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) |
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gapB
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NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
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Position: -195
Score: 5.1 Sequence: CCTATTTTTAAATATAAATTAAT
Locus tag: VSAK1_16967
Name: ompU Funciton: Outer membrane protein OmpU |
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ompU
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Outer membrane protein OmpU
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Position: -286
Score: 4.7 Sequence: TTTTATTCACTGCGTAAAATTAA
Locus tag: VSAK1_26880
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
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ptsG
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PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
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Position: -133
Score: 5 Sequence: ATTGATTTGAAGCAAAAAATAAA
Locus tag: VSAK1_08019
Name: pyrG Funciton: CTP synthase (EC 6.3.4.2) |
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pyrG
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CTP synthase (EC 6.3.4.2)
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Position: -110
Score: 5 Sequence: TTTAATTTGCGGAGCAAAATTAA
Position: -68
Score: 3.5 Sequence: CTAAATTGAACGGCTAAAATAAG
Locus tag: VSAK1_10638
Name: nagE1 Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
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nagE1
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PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
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Position: -62
Score: 5.4 Sequence: CTTATTTTATAATGCGAATTAAT
Locus tag: VSAK1_20854
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Position: -118
Score: 4.4 Sequence: CTTATTTTTCCACTCTAAATTAC
Locus tag: VSAK1_17082
Name: cbp Funciton: Chitin binding protein |
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cbp
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Chitin binding protein
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Position: -207
Score: 5.6 Sequence: TTTATTTTAAGCCAAAAAATAAA
Locus tag: VSAK1_11440
Name: ptsH Funciton: Phosphocarrier protein of PTS system
Locus tag: VSAK1_11445
Name: ptsI Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
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ptsH
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Phosphocarrier protein of PTS system
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ptsI
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Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
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Position: -113
Score: 5 Sequence: TTATTTTTTGAACACAAAATAAA
Locus tag: VSAK1_11970
Name: chiA Funciton: Chitinase (EC 3.2.1.14) |
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chiA
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Chitinase (EC 3.2.1.14)
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Position: -126
Score: 4.5 Sequence: TTAATTTTGATGCTTGAAATTAA
Locus tag: VSAK1_14330
Name: pgk Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VSAK1_14335
Name: fbaA Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) |
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pgk
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Phosphoglycerate kinase (EC 2.7.2.3)
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fbaA
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Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
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Position: -291
Score: 5 Sequence: CTTATTTTATCATACGAAAAAAT
Locus tag: VSAK1_10643
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VSAK1_10648
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagC
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N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |