Regulon of LexA in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_12472 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 24 |
| - Operons | 17 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Vibrionales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -170
Score: 5.3 Sequence: ATCTGGACATTTATCCAGTA
Locus tag: VSAK1_13165
Name: rmuC Funciton: DNA recombination protein RmuC |
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rmuC
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DNA recombination protein RmuC
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Position: -45
Score: 5.4 Sequence: TACTGGATATACTCACAGTT
Position: -25
Score: 5.7 Sequence: AACTGTATAAACAGACAGGT
Locus tag: VSAK1_12472
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -131
Score: 5.4 Sequence: CACTGTATGAATCAACAGTA
Locus tag: VSAK1_02059
Name: recA Funciton: Recombinase A
Locus tag: VSAK1_02064
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -68
Score: 6 Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.6 Sequence: TACTGAATTTACATACAGTA
Position: -28
Score: 4.9 Sequence: TAATGTTCATTTAAACAGGT
Locus tag: VSAK1_11915
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -90
Score: 5.5 Sequence: AACTGGCTATTTATACAGTT
Locus tag: VSAK1_03504
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -177
Score: 4.9 Sequence: CACTGATTATTCATACAGCA
Locus tag: VSAK1_11158
Name: mutH Funciton: DNA mismatch repair endonuclease MutH |
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mutH
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DNA mismatch repair endonuclease MutH
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Position: -204
Score: 5.1 Sequence: TACAGTATTCTTATACAGTA
Position: -39
Score: 5.6 Sequence: TACTGTATACACATACAGCA
Locus tag: VSAK1_06160
Name: VC1191 Funciton: Superfamily II DNA and RNA helicase |
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VC1191
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Superfamily II DNA and RNA helicase
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Position: -21
Score: 5.2 Sequence: TACTGTATAAACATCCAAGA
Locus tag: VSAK1_11208
Name: xerD Funciton: Site-specific recombinase XerD
Locus tag: VSAK1_11203
Name: dsbC Funciton: Thiol:disulfide interchange protein
Locus tag: VSAK1_11198
Name: dsbC Funciton: Thiol:disulfide interchange protein
Locus tag: VSAK1_11193
Name: recJ Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
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xerD
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Site-specific recombinase XerD
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dsbC
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Thiol:disulfide interchange protein
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dsbC
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Thiol:disulfide interchange protein
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recJ
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Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
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Position: -32
Score: 5.4 Sequence: AACTGTACACAAACACAGTA
Locus tag: VSAK1_25360
Name: intIA Funciton: Integron integrase IntI4 |
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intIA
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Integron integrase IntI4
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Position: -27
Score: 5.9 Sequence: TACTGTACATATATACAGGT
Locus tag: VSAK1_26830
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: VSAK1_26835
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: VSAK1_26840
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -65
Score: 5.6 Sequence: TACTGGATATTCATACAGCA
Position: -37
Score: 5.3 Sequence: TACTGGTTGTACATACAGCA
Locus tag: VSAK1_25105
Name: VC1368 Funciton: Conserved hypothetical protein |
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VC1368
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Conserved hypothetical protein
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Position: -64
Score: 5.7 Sequence: AACTGTACAAAAAGACAGTA
Locus tag: VSAK1_09763
Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
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recG
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ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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Position: -24
Score: 6.2 Sequence: AACTGTATAAATAAACAGTT
Locus tag: VSAK1_12155
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -66
Score: 5.4 Sequence: AACTGGATACCTATCCAGTT
Locus tag: VSAK1_00385
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: VSAK1_00390
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -84
Score: 5.3 Sequence: ACCTGTTTTTTTATCCAGTA
Locus tag: VSAK1_08166
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -30
Score: 5.3 Sequence: ATATGTATAAATAACCAGTA
Locus tag: VSAK1_24239
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -57
Score: 5.6 Sequence: ATCTGTATAAACAGACAGTA
Locus tag: VSAK1_08581
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |