Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio shilonii AK1

Properties
Regulator type: Transcription factor
TF locus tag: VSAK1_12472
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 24
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -170
Score: 5.3
Sequence: ATCTGGACATTTATCCAGTA
Locus tag: VSAK1_13165
Name: rmuC
Funciton: DNA recombination protein RmuC
VSAK1_13165
rmuC
DNA recombination protein RmuC
Position: -45
Score: 5.4
Sequence: TACTGGATATACTCACAGTT
Position: -25
Score: 5.7
Sequence: AACTGTATAAACAGACAGGT
Locus tag: VSAK1_12472
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VSAK1_12472
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -131
Score: 5.4
Sequence: CACTGTATGAATCAACAGTA
Locus tag: VSAK1_02059
Name: recA
Funciton: Recombinase A
Locus tag: VSAK1_02064
Name: recX
Funciton: Regulatory protein RecX
VSAK1_02059
recA
Recombinase A
VSAK1_02064
recX
Regulatory protein RecX
Position: -68
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.6
Sequence: TACTGAATTTACATACAGTA
Position: -28
Score: 4.9
Sequence: TAATGTTCATTTAAACAGGT
Locus tag: VSAK1_11915
Name: recN
Funciton: DNA repair protein RecN
VSAK1_11915
recN
DNA repair protein RecN
Position: -90
Score: 5.5
Sequence: AACTGGCTATTTATACAGTT
Locus tag: VSAK1_03504
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VSAK1_03504
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -177
Score: 4.9
Sequence: CACTGATTATTCATACAGCA
Locus tag: VSAK1_11158
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VSAK1_11158
mutH
DNA mismatch repair endonuclease MutH
Position: -204
Score: 5.1
Sequence: TACAGTATTCTTATACAGTA
Position: -39
Score: 5.6
Sequence: TACTGTATACACATACAGCA
Locus tag: VSAK1_06160
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VSAK1_06160
VC1191
Superfamily II DNA and RNA helicase
Position: -21
Score: 5.2
Sequence: TACTGTATAAACATCCAAGA
Locus tag: VSAK1_11208
Name: xerD
Funciton: Site-specific recombinase XerD
Locus tag: VSAK1_11203
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: VSAK1_11198
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: VSAK1_11193
Name: recJ
Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
VSAK1_11208
xerD
Site-specific recombinase XerD
VSAK1_11203
dsbC
Thiol:disulfide interchange protein
VSAK1_11198
dsbC
Thiol:disulfide interchange protein
VSAK1_11193
recJ
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Position: -32
Score: 5.4
Sequence: AACTGTACACAAACACAGTA
Locus tag: VSAK1_25360
Name: intIA
Funciton: Integron integrase IntI4
VSAK1_25360
intIA
Integron integrase IntI4
Position: -27
Score: 5.9
Sequence: TACTGTACATATATACAGGT
Locus tag: VSAK1_26830
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: VSAK1_26835
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: VSAK1_26840
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
VSAK1_26830
imuA
Predicted RecA/RadA recombinase
VSAK1_26835
imuB
DNA polymerase-like protein PA0670
VSAK1_26840
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -65
Score: 5.6
Sequence: TACTGGATATTCATACAGCA
Position: -37
Score: 5.3
Sequence: TACTGGTTGTACATACAGCA
Locus tag: VSAK1_25105
Name: VC1368
Funciton: Conserved hypothetical protein
VSAK1_25105
VC1368
Conserved hypothetical protein
Position: -64
Score: 5.7
Sequence: AACTGTACAAAAAGACAGTA
Locus tag: VSAK1_09763
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
VSAK1_09763
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -24
Score: 6.2
Sequence: AACTGTATAAATAAACAGTT
Locus tag: VSAK1_12155
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VSAK1_12155
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -66
Score: 5.4
Sequence: AACTGGATACCTATCCAGTT
Locus tag: VSAK1_00385
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VSAK1_00390
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VSAK1_00385
ruvA
Holliday junction DNA helicase RuvA
VSAK1_00390
ruvB
Holliday junction DNA helicase RuvB
Position: -84
Score: 5.3
Sequence: ACCTGTTTTTTTATCCAGTA
Locus tag: VSAK1_08166
Name: uvrA
Funciton: Excinuclease ABC subunit A
VSAK1_08166
uvrA
Excinuclease ABC subunit A
Position: -30
Score: 5.3
Sequence: ATATGTATAAATAACCAGTA
Locus tag: VSAK1_24239
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VSAK1_24239
uvrD
ATP-dependent DNA helicase II
Position: -57
Score: 5.6
Sequence: ATCTGTATAAACAGACAGTA
Locus tag: VSAK1_08581
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VSAK1_08581
yebG
SOS regulon DNA damage-inducible protein
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