Regulog LexA - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Vibrionales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 21 | 17 |
| Vibrio vulnificus CMCP6 | 25 | 18 |
| Vibrio harveyi ATCC BAA-1116 | 27 | 20 |
| Vibrio parahaemolyticus RIMD 2210633 | 22 | 18 |
| Vibrio shilonii AK1 | 24 | 17 |
| Vibrio splendidus LGP32 | 19 | 16 |
| Vibrio fischeri ES114 | 17 | 14 |
| Vibrio salmonicida LFI1238 | 17 | 14 |
| Vibrio angustum S14 | 17 | 13 |
| Photobacterium profundum SS9 | 16 | 12 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| mutH |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -174 score = 4.07562 sequence = TACTGTTTATTGATCCATAC Gene: VC0668: DNA mismatch repair endonuclease MutH |
*
Vibrio vulnificus CMCP6 Site: position = -163 score = 4.63327 sequence = TACTGTTTATTGATCCATGA Gene: VV1_0521: DNA mismatch repair endonuclease MutH |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -162 score = 4.64305 sequence = CCCTGTTTATTCATCCAGCC Gene: VIBHAR_00966: DNA mismatch repair endonuclease MutH |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -162 score = 4.64305 sequence = CCCTGTTTATTCATCCAGCC Gene: VP0518: DNA mismatch repair endonuclease MutH |
*
Vibrio shilonii AK1 Site: position = -177 score = 4.92901 sequence = CACTGATTATTCATACAGCA Gene: VSAK1_11158: DNA mismatch repair endonuclease MutH |
*
Vibrio splendidus LGP32 Site: position = -115 score = 4.86828 sequence = CCCTGTTTATTTATCCACTA Gene: VS_0522: DNA mismatch repair endonuclease MutH |
*
Vibrio fischeri ES114 Site: position = -140 score = 4.92501 sequence = CACTGTATATGGATCCAGAA Gene: VF_0455: DNA mismatch repair endonuclease MutH |
*
Vibrio salmonicida LFI1238 Site: position = -137 score = 5.3528 sequence = CACTGTATATAGATCCAGAA Gene: VSAL_I0568: DNA mismatch repair endonuclease MutH |
*
Vibrio angustum S14 Site: position = -165 score = 4.99209 sequence = GCCTGTCTATTTAAACAGTT Gene: VAS14_07584: DNA mismatch repair endonuclease MutH |
Gene: PBPRA0576: DNA mismatch repair endonuclease MutH |
DNA mismatch repair endonuclease MutH |
| CRON 2. | |||||||||||
| VC1191 |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -39 score = 5.761 sequence = TACTGTATTTACATACAGCA Gene: VC1191: Superfamily II DNA and RNA helicase |
*
Vibrio vulnificus CMCP6 Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VV1_2796: Superfamily II DNA and RNA helicase |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -105 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VIBHAR_02055: Superfamily II DNA and RNA helicase |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VP1264: Superfamily II DNA and RNA helicase |
*
Vibrio shilonii AK1 Site: position = -204 score = 5.05126 sequence = TACAGTATTCTTATACAGTA Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VSAK1_06160: Superfamily II DNA and RNA helicase |
*
Vibrio splendidus LGP32 Site: position = 78 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VS_1206: Superfamily II DNA and RNA helicase |
*
Vibrio fischeri ES114 Site: position = -43 score = 5.40131 sequence = TACTGTATAAATACACACTG Gene: VF_1493: Superfamily II DNA and RNA helicase |
*
Vibrio salmonicida LFI1238 Site: position = -21 score = 5.40131 sequence = TACTGTATAAATACACACTG Gene: VSAL_I1693: Superfamily II DNA and RNA helicase |
|
|
Superfamily II DNA and RNA helicase |
| CRON 3. | |||||||||||
| xerD |
Gene: VC2419: Site-specific recombinase XerD |
Gene: VV1_0530: Site-specific recombinase XerD |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -32 score = 5.31738 sequence = TACTGTAAATATAAACAGAT Gene: VIBHAR_00956: Site-specific recombinase XerD |
Gene: VP0509: Site-specific recombinase XerD |
*
Vibrio shilonii AK1 Site: position = -21 score = 5.24511 sequence = TACTGTATAAACATCCAAGA Gene: VSAK1_11208: Site-specific recombinase XerD |
Gene: VS_0512: Site-specific recombinase XerD |
*
Vibrio fischeri ES114 Site: position = -51 score = 4.99869 sequence = TACTGTAATTCTAACCAGTG Gene: VF_0448: Site-specific recombinase XerD |
*
Vibrio salmonicida LFI1238 Site: position = -45 score = 5.21354 sequence = TACTGTAATTCTAACCAGTA Gene: VSAL_I0562: Site-specific recombinase XerD |
*
Vibrio angustum S14 Site: position = -55 score = 4.54076 sequence = TACTGTGTTTTTATCCATGT Gene: VAS14_07634: Site-specific recombinase XerD |
*
Photobacterium profundum SS9 Site: position = -78 score = 4.41322 sequence = TACTGTGTTTATATCCATGC Gene: PBPRA0566: Site-specific recombinase XerD |
Site-specific recombinase XerD |
| dsbC |
Gene: VC2418: Thiol:disulfide interchange protein |
Gene: VV1_0529: Thiol:disulfide interchange protein |
Gene: VIBHAR_00957: Thiol:disulfide interchange protein |
Gene: VP0510: Thiol:disulfide interchange protein |
2
Vibrio shilonii AK1 Gene: VSAK1_11203: Thiol:disulfide interchange protein Gene: VSAK1_11198: Thiol:disulfide interchange protein |
Gene: VS_0513: Thiol:disulfide interchange protein |
Gene: VF_0449: Thiol:disulfide interchange protein |
Gene: VSAL_I0563: Thiol:disulfide interchange protein |
Gene: VAS14_07629: Thiol:disulfide interchange protein |
Gene: PBPRA0567: Thiol:disulfide interchange protein |
Thiol:disulfide interchange protein |
| recJ |
Gene: VC2417: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VV1_0528: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VIBHAR_00958: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VP0511: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VSAK1_11193: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VS_0514: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VF_0450: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VSAL_I0564: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: VAS14_07624: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Gene: PBPRA0568: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) |
| CRON 4. | |||||||||||
| uvrB |
Gene: VC1018: Excinuclease ABC subunit B |
*
Vibrio vulnificus CMCP6 Site: position = -48 score = 5.31307 sequence = GAGTGTATATTTATACAGTT Gene: VV1_3092: Excinuclease ABC subunit B |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -46 score = 4.83342 sequence = AGGTGTATATATATACAGCC Gene: VIBHAR_02961: Excinuclease ABC subunit B |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -74 score = 4.9601 sequence = AGGTGTATATATATACAGCG Gene: VP2100: Excinuclease ABC subunit B |
2
Vibrio shilonii AK1 Gene: VSAK1_03660: Excinuclease ABC subunit B Gene: VSAK1_06550: Excinuclease ABC subunit B |
*
Vibrio splendidus LGP32 Site: position = -35 score = 4.99543 sequence = ACCTGATTAAAAAAACAGTA Gene: VS_0980: Excinuclease ABC subunit B |
Gene: VF_0936: Excinuclease ABC subunit B |
Gene: VSAL_I1873: Excinuclease ABC subunit B |
2
Vibrio angustum S14 Gene: VAS14_15759: Excinuclease ABC subunit B Gene: VAS14_05553: Excinuclease ABC subunit B |
Gene: PBPRA1118: Excinuclease ABC subunit B |
Excinuclease ABC subunit B |
| CRON 5. | |||||||||||
| intIA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -40 score = 5.91946 sequence = TACTGTACAAATAACCAGTT Gene: VCA0291: Integron integrase IntI4 |
*
Vibrio vulnificus CMCP6 Site: position = -75 score = 4.26177 sequence = GGCTGTATATATACACATAT Gene: VV1_2401: Integron integrase IntI4 |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -30 score = 5.6887 sequence = AACTGTATAAACAACCAGTC Gene: VIBHAR_02003: Integron integrase IntI4 |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -30 score = 5.08349 sequence = ACCTGTATAAATAAACAGAC Gene: VP1865: Integron integrase IntI4 |
*
Vibrio shilonii AK1 Site: position = -32 score = 5.38103 sequence = AACTGTACACAAACACAGTA Gene: VSAK1_25360: Integron integrase IntI4 |
*
Vibrio splendidus LGP32 Site: position = -29 score = 5.18548 sequence = TCATGTACATATAACCAGTT Gene: VS_1890: Integron integrase IntI4 |
|
|
|
|
Integron integrase IntI4 |
| CRON 6. | |||||||||||
| imuA |
|
*
Vibrio vulnificus CMCP6 Site: position = -28 score = 5.81761 sequence = TACTGTATGTATATACAGGT Gene: VV1_2987: Predicted RecA/RadA recombinase |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -29 score = 5.63035 sequence = TACTGTAAATATATACAGGT Gene: VIBHAR_02866: Predicted RecA/RadA recombinase |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -29 score = 5.88268 sequence = TACTGTATTTATATACAGGT Gene: VP2034: Predicted RecA/RadA recombinase |
*
Vibrio shilonii AK1 Site: position = -27 score = 5.86424 sequence = TACTGTACATATATACAGGT Gene: VSAK1_26830: Predicted RecA/RadA recombinase |
*
Vibrio splendidus LGP32 Site: position = -28 score = 6.06561 sequence = TACTGTATAAATATACAGGT Gene: VS_1042: Predicted RecA/RadA recombinase |
|
|
|
|
Predicted RecA/RadA recombinase |
| imuB |
|
Gene: VV1_2988: DNA polymerase-like protein PA0670 |
Gene: VIBHAR_02867: DNA polymerase-like protein PA0670 |
Gene: VP2035: DNA polymerase-like protein PA0670 |
Gene: VSAK1_26835: DNA polymerase-like protein PA0670 |
Gene: VS_1041: DNA polymerase-like protein PA0670 |
|
|
|
|
DNA polymerase-like protein PA0670 |
| dnaE2 |
|
Gene: VV1_2989: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: VIBHAR_02868: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: VP2036: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: VSAK1_26840: DNA polymerase III alpha subunit (EC 2.7.7.7) |
Gene: VS_1040: DNA polymerase III alpha subunit (EC 2.7.7.7) |
|
|
|
|
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 7. | |||||||||||
| VC1368 |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -60 score = 5.81335 sequence = AACTGTATTAAAAAACAGTA Site: position = -10 score = 4.74844 sequence = TGCTGTAATTATGTACAGTG Gene: VC1368: Conserved hypothetical protein |
*
Vibrio vulnificus CMCP6 Site: position = -39 score = 5.39453 sequence = TACTGAGTATACATACAGTT Site: position = -88 score = 5.52879 sequence = GACTGTATAAATGAACAGTA Gene: VV1_2297: Conserved hypothetical protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -39 score = 6.00745 sequence = TACTGTATATGTATACAGTA Gene: VIBHAR_02527: Conserved hypothetical protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -39 score = 5.96978 sequence = TACTGTTTTTATATACAGTA Gene: VP1428: Conserved hypothetical protein |
*
Vibrio shilonii AK1 Site: position = -37 score = 5.2528 sequence = TACTGGTTGTACATACAGCA Site: position = -65 score = 5.61801 sequence = TACTGGATATTCATACAGCA Gene: VSAK1_25105: Conserved hypothetical protein |
Gene: VS_1790: Conserved hypothetical protein |
|
|
|
|
Conserved hypothetical protein |
| CRON 8. | |||||||||||
| umuD |
|
*
Vibrio vulnificus CMCP6 Site: position = -29 score = 5.93004 sequence = AACTGTATATATGTACAGTT Gene: VV1_0390: DNA polymerase V, subunit UmuD |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -26 score = 6.33839 sequence = TACTGTATATATAAACAGTA Gene: VIBHAR_p08270: DNA polymerase V, subunit UmuD |
|
|
|
*
Vibrio fischeri ES114 Site: position = -27 score = 5.2138 sequence = CGCTGTACTTATATACAGTG Gene: VF_1269: DNA polymerase V, subunit UmuD |
|
*
Vibrio angustum S14 Site: position = -10 score = 5.88678 sequence = AACTGTATAAATGTACAGTT Gene: VAS14_12359: DNA polymerase V, subunit UmuD |
*
Photobacterium profundum SS9 Site: position = -4 score = 5.41228 sequence = AACTGTGCATACATACAGTG Gene: PBPRB0973: DNA polymerase V, subunit UmuD |
DNA polymerase V, subunit UmuD |
| umuC |
|
Gene: VV1_0391: DNA polymerase V, subunit UmuC |
Gene: VIBHAR_p08269: DNA polymerase V, subunit UmuC |
|
|
|
|
|
Gene: VAS14_12354: DNA polymerase V, subunit UmuC |
Gene: PBPRB0972: DNA polymerase V, subunit UmuC |
DNA polymerase V, subunit UmuC |
| CRON 9. | |||||||||||
| recG |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VC2711: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*2
Vibrio vulnificus CMCP6 Site: position = -65 score = 4.73978 sequence = TCCTGTACAAAAACACAGCC Gene: VV1_0854: ATP-dependent DNA helicase RecG (EC 3.6.1.-) Gene: VV1_0855: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VIBHAR_00625: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VP0157: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Vibrio shilonii AK1 Site: position = -64 score = 5.67315 sequence = AACTGTACAAAAAGACAGTA Gene: VSAK1_09763: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
*
Vibrio splendidus LGP32 Site: position = -52 score = 5.16613 sequence = GCCTGTACAAAAATCCAGTA Gene: VS_0158: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: VF_2460: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: VSAL_I2910: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: VAS14_21732: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
Gene: PBPRA0187: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
| CRON 10. | |||||||||||
| dinB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -30 score = 5.76819 sequence = TACTGTTTATGTATACAGTA Gene: VC2287: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio vulnificus CMCP6 Site: position = -37 score = 5.11805 sequence = TACTGTGTTTTTGTCCAGTT Gene: VV1_1830: DNA polymerase IV (EC 2.7.7.7) |
Gene: VIBHAR_03264: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -31 score = 5.64967 sequence = TACTGTATTTTTAACCAGTG Gene: VP2342: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio shilonii AK1 Site: position = -24 score = 6.20361 sequence = AACTGTATAAATAAACAGTT Gene: VSAK1_12155: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio splendidus LGP32 Site: position = -41 score = 5.93456 sequence = TACTGTTTATAAATACAGTT Gene: VS_0702: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio fischeri ES114 Site: position = -27 score = 5.57126 sequence = AACTGTGTTTTTATACAGTT Gene: VF_0734: DNA polymerase IV (EC 2.7.7.7) |
*2
Vibrio salmonicida LFI1238 Site: position = -68 score = 5.79745 sequence = AACTGTGTATTTATACAGTT Gene: VSAL_I0957: DNA polymerase IV (EC 2.7.7.7) Site: position = -132 score = 5.77174 sequence = GACTGTATATTTAAACAGTT Gene: VSAL_I0965: DNA polymerase IV (EC 2.7.7.7) |
*
Vibrio angustum S14 Site: position = -30 score = 5.65073 sequence = AGCTGTATGTATAAACAGTA Gene: VAS14_16776: DNA polymerase IV (EC 2.7.7.7) |
*
Photobacterium profundum SS9 Site: position = -64 score = 6.07698 sequence = TACTGTATATAAAAACAGTT Gene: PBPRA0832: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 11. | |||||||||||
| rmuC |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -56 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VC0082: DNA recombination protein RmuC |
*
Vibrio vulnificus CMCP6 Site: position = -67 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VV1_0910: DNA recombination protein RmuC |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -67 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VIBHAR_00561: DNA recombination protein RmuC |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -67 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VP0094: DNA recombination protein RmuC |
*
Vibrio shilonii AK1 Site: position = -170 score = 5.27746 sequence = ATCTGGACATTTATCCAGTA Gene: VSAK1_13165: DNA recombination protein RmuC |
*
Vibrio splendidus LGP32 Site: position = -68 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VS_0097: DNA recombination protein RmuC |
*
Vibrio fischeri ES114 Site: position = -62 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VF_0044: DNA recombination protein RmuC |
*
Vibrio salmonicida LFI1238 Site: position = -62 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VSAL_I2995: DNA recombination protein RmuC |
*
Vibrio angustum S14 Site: position = -73 score = 5.34265 sequence = AGCTGGACATTTATCCAGTA Gene: VAS14_22754: DNA recombination protein RmuC |
*
Photobacterium profundum SS9 Site: position = -68 score = 5.38549 sequence = TGCTGGACATTTATCCAGTA Gene: PBPRA0115: DNA recombination protein RmuC |
DNA recombination protein RmuC |
| CRON 12. | |||||||||||
| lexA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 4.96964 sequence = CACTGGATATACTCACAGTC Gene: VC0092: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio vulnificus CMCP6 Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Gene: VV1_1166: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VIBHAR_00268: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VP2945: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio shilonii AK1 Site: position = -25 score = 5.66447 sequence = AACTGTATAAACAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VSAK1_12472: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio splendidus LGP32 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.15185 sequence = TACTGGATATACTCACAGTC Gene: VS_3006: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio fischeri ES114 Site: position = -25 score = 5.66447 sequence = AACTGTATAAACAGACAGGT Site: position = -45 score = 5.086 sequence = AGCTGTATATACTCACAGTG Gene: VF_2442: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio salmonicida LFI1238 Site: position = -25 score = 5.5251 sequence = CACTGTATAAACAGACAGGT Site: position = -45 score = 5.25217 sequence = AGCTGTATATACTCACAGTT Gene: VSAL_I2893: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Vibrio angustum S14 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.09633 sequence = CACTGGATATACTCACAGTG Gene: VAS14_21837: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Photobacterium profundum SS9 Site: position = -65 score = 5.31025 sequence = GACTGTATAAACAAACAGGG Site: position = -85 score = 5.31117 sequence = CACTGGATATACTCACAGTA Gene: PBPRA0165: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 13. | |||||||||||
| ruvA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -71 score = 5.17668 sequence = TACTGGCTATCCATCCAGTT Gene: VC1846: Holliday junction DNA helicase RuvA |
*
Vibrio vulnificus CMCP6 Site: position = -63 score = 5.42845 sequence = AACTGGATGTCTATCCAGTT Gene: VV1_2159: Holliday junction DNA helicase RuvA |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -6 score = 5.11864 sequence = GACTGGATGTCTATCCAGTT Gene: VIBHAR_01600: Holliday junction DNA helicase RuvA |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -63 score = 5.11864 sequence = GACTGGATGTCTATCCAGTT Gene: VP1051: Holliday junction DNA helicase RuvA |
*
Vibrio shilonii AK1 Site: position = -66 score = 5.3772 sequence = AACTGGATACCTATCCAGTT Gene: VSAK1_00385: Holliday junction DNA helicase RuvA |
*
Vibrio splendidus LGP32 Site: position = -67 score = 5.58643 sequence = AACTGGATAAGTATCCAGTT Gene: VS_1107: Holliday junction DNA helicase RuvA |
*
Vibrio fischeri ES114 Site: position = -66 score = 5.76256 sequence = TACTGGATATCTATCCAGTT Gene: VF_0951: Holliday junction DNA helicase RuvA |
*
Vibrio salmonicida LFI1238 Site: position = -66 score = 5.76256 sequence = TACTGGATATCTATCCAGTT Gene: VSAL_I1888: Holliday junction DNA helicase RuvA |
*
Vibrio angustum S14 Site: position = -66 score = 5.42845 sequence = AACTGGATGTCTATCCAGTT Gene: VAS14_18066: Holliday junction DNA helicase RuvA |
*
Photobacterium profundum SS9 Site: position = -65 score = 5.00963 sequence = TGCTGGATATCCATCCAGCA Gene: PBPRA1116: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| ruvB |
Gene: VC1845: Holliday junction DNA helicase RuvB |
2
Vibrio vulnificus CMCP6 Gene: VV1_2161: Holliday junction DNA helicase RuvB Gene: VV1_2160: Holliday junction DNA helicase RuvB |
Gene: VIBHAR_01601: Holliday junction DNA helicase RuvB |
Gene: VP1052: Holliday junction DNA helicase RuvB |
Gene: VSAK1_00390: Holliday junction DNA helicase RuvB |
Gene: VS_1108: Holliday junction DNA helicase RuvB |
Gene: VF_0952: Holliday junction DNA helicase RuvB |
Gene: VSAL_I1889: Holliday junction DNA helicase RuvB |
Gene: VAS14_18071: Holliday junction DNA helicase RuvB |
Gene: PBPRA1117: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 14. | |||||||||||
| uvrA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -85 score = 5.67925 sequence = AACTGTTTTTTTATCCAGTA Gene: VC0394: Excinuclease ABC subunit A |
*
Vibrio vulnificus CMCP6 Site: position = -88 score = 5.67925 sequence = AACTGTTTTTTTATCCAGTA Gene: VV1_1427: Excinuclease ABC subunit A |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -86 score = 5.30842 sequence = TACTGTTTTTTTGTCCAGTA Gene: VIBHAR_03708: Excinuclease ABC subunit A |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -85 score = 5.30842 sequence = TACTGTTTTTTTGTCCAGTA Gene: VP2712: Excinuclease ABC subunit A |
*
Vibrio shilonii AK1 Site: position = -84 score = 5.3458 sequence = ACCTGTTTTTTTATCCAGTA Gene: VSAK1_08166: Excinuclease ABC subunit A |
*
Vibrio splendidus LGP32 Site: position = -84 score = 5.7221 sequence = TACTGTTTTTTTATCCAGTA Gene: VS_0320: Excinuclease ABC subunit A |
*
Vibrio fischeri ES114 Site: position = -90 score = 5.53989 sequence = CACTGTTTTTTTATCCAGTA Gene: VF_0341: Excinuclease ABC subunit A |
*
Vibrio salmonicida LFI1238 Site: position = -88 score = 5.7221 sequence = TACTGTTTTTTTATCCAGTA Gene: VSAL_I0447: Excinuclease ABC subunit A |
*
Vibrio angustum S14 Site: position = -87 score = 4.95924 sequence = TACTGTGTTTTTACTCAGTA Gene: VAS14_19446: Excinuclease ABC subunit A |
*
Photobacterium profundum SS9 Site: position = -91 score = 5.44717 sequence = TACTGTATCTTTATACAGCA Gene: PBPRA3290: Excinuclease ABC subunit A |
Excinuclease ABC subunit A |
| CRON 15. | |||||||||||
| uvrD |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -28 score = 5.13539 sequence = TTATGTATAAATAACCAGTG Gene: VC0190: ATP-dependent DNA helicase II |
*
Vibrio vulnificus CMCP6 Site: position = -30 score = 5.79402 sequence = TTCTGTATAAATAACCAGTA Gene: VV1_0949: ATP-dependent DNA helicase II |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -29 score = 5.35024 sequence = TTATGTATAAATAACCAGTA Gene: VIBHAR_00351: ATP-dependent DNA helicase II |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -27 score = 5.35024 sequence = TTATGTATAAATAACCAGTA Gene: VP3013: ATP-dependent DNA helicase II |
*
Vibrio shilonii AK1 Site: position = -30 score = 5.30739 sequence = ATATGTATAAATAACCAGTA Gene: VSAK1_24239: ATP-dependent DNA helicase II |
*
Vibrio splendidus LGP32 Site: position = -33 score = 5.2356 sequence = TTATGTATAAATACCCAGTA Gene: VS_3084: ATP-dependent DNA helicase II |
*
Vibrio fischeri ES114 Site: position = -27 score = 5.17783 sequence = ACATGTATAAATAACCAGTG Gene: VF_0068: ATP-dependent DNA helicase II |
*
Vibrio salmonicida LFI1238 Site: position = -27 score = 5.17783 sequence = ACATGTATAAATAACCAGTG Gene: VSAL_I0222: ATP-dependent DNA helicase II |
*
Vibrio angustum S14 Site: position = -27 score = 5.43893 sequence = CATTGTATAAATAACCAGTA Gene: VAS14_22899: ATP-dependent DNA helicase II |
*
Photobacterium profundum SS9 Site: position = -27 score = 5.43893 sequence = CATTGTATAAATAACCAGTA Gene: PBPRA3513: ATP-dependent DNA helicase II |
ATP-dependent DNA helicase II |
| CRON 16. | |||||||||||
| yebG |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -49 score = 5.85979 sequence = AACTGTATAAACAGCCAGTT Gene: VC2326: SOS regulon DNA damage-inducible protein |
*
Vibrio vulnificus CMCP6 Site: position = -54 score = 5.64441 sequence = AGCTGTATAAACACACAGTA Gene: VV1_1791: SOS regulon DNA damage-inducible protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -53 score = 5.83541 sequence = AACTGTATAAAAAGCCAGTA Gene: VIBHAR_03306: SOS regulon DNA damage-inducible protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -47 score = 5.83541 sequence = AACTGTATAAAAAGCCAGTA Gene: VP2379: SOS regulon DNA damage-inducible protein |
*
Vibrio shilonii AK1 Site: position = -57 score = 5.57209 sequence = ATCTGTATAAACAGACAGTA Gene: VSAK1_08581: SOS regulon DNA damage-inducible protein |
*
Vibrio splendidus LGP32 Site: position = -48 score = 5.62056 sequence = AACTGTATAAAAAGCCAGTG Gene: VS_0670: SOS regulon DNA damage-inducible protein |
*
Vibrio fischeri ES114 Site: position = -41 score = 5.50538 sequence = TACTGTATAAAACACCAGTT Gene: VF_0577: SOS regulon DNA damage-inducible protein |
*
Vibrio salmonicida LFI1238 Site: position = -41 score = 5.50538 sequence = TACTGTATAAAACACCAGTT Gene: VSAL_I0676: SOS regulon DNA damage-inducible protein |
*
Vibrio angustum S14 Site: position = -44 score = 5.95131 sequence = TACTGTATAAACAGCCAGTA Gene: VAS14_20761: SOS regulon DNA damage-inducible protein |
*
Photobacterium profundum SS9 Site: position = -38 score = 5.52352 sequence = TACTGTATAAGCAGCCAGTA Gene: PBPRA3003: SOS regulon DNA damage-inducible protein |
SOS regulon DNA damage-inducible protein |
| CRON 17. | |||||||||||
| topB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -84 score = 5.51335 sequence = TACTGGTTAAATTTACAGTT Gene: VC2043: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio vulnificus CMCP6 Site: position = -87 score = 5.75784 sequence = AACTGTCTATACATACAGTT Gene: VV1_3130: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -84 score = 5.05334 sequence = TACTGTTTACCTGTACAGTT Gene: VIBHAR_03041: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -85 score = 5.73735 sequence = TACTGTTCATTTATACAGTT Gene: VP2149: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio shilonii AK1 Site: position = -90 score = 5.52833 sequence = AACTGGCTATTTATACAGTT Gene: VSAK1_03504: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio splendidus LGP32 Site: position = -85 score = 5.98156 sequence = AACTGTATAAACAACCAGTT Gene: VS_0940: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio fischeri ES114 Site: position = -29 score = 5.31483 sequence = AACTGTCTATTCATACAGGT Gene: VF_1641: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio salmonicida LFI1238 Site: position = -57 score = 4.90115 sequence = AACTGTCTATTCGTACAGGT Gene: VSAL_I2155: DNA topoisomerase III (EC 5.99.1.2) |
*
Vibrio angustum S14 Site: position = -86 score = 5.6407 sequence = AACTGGTTTTATATCCAGTA Gene: VAS14_05738: DNA topoisomerase III (EC 5.99.1.2) |
*
Photobacterium profundum SS9 Site: position = -88 score = 5.22896 sequence = AACTGTTGTTATATCCAGTA Gene: PBPRA2590: DNA topoisomerase III (EC 5.99.1.2) |
DNA topoisomerase III (EC 5.99.1.2) |
| CRON 18. | |||||||||||
| rstA |
*2
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -89 score = 3.97129 sequence = GGCTGTTTTTTTGTACATTA Gene: VC1463: RstA phage-related replication protein Site: position = -89 score = 3.97129 sequence = GGCTGTTTTTTTGTACATTA Gene: VC1454: RstA phage-related replication protein |
|
|
|
|
|
|
|
|
|
RstA phage-related replication protein |
| rstB |
2
Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1453: RstB phage-related integrase Gene: VC1462: RstB phage-related integrase |
|
|
|
|
|
|
|
|
|
RstB phage-related integrase |
| CRON 19. | |||||||||||
| recN |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -26 score = 4.72585 sequence = TATTGGTTAATCATACAGGT Site: position = -66 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -44 score = 5.97019 sequence = AACTGTTTAAACATACAGTA Gene: VC0852: DNA repair protein RecN |
*
Vibrio vulnificus CMCP6 Site: position = -46 score = 5.73765 sequence = TACTGAATTTATATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VV1_0367: DNA repair protein RecN |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -46 score = 5.46196 sequence = TACTGTTTTCTTATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VIBHAR_01130: DNA repair protein RecN |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -46 score = 5.38264 sequence = TACTGTTCTCATATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VP0648: DNA repair protein RecN |
*
Vibrio shilonii AK1 Site: position = -28 score = 4.91903 sequence = TAATGTTCATTTAAACAGGT Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -46 score = 5.59797 sequence = TACTGAATTTACATACAGTA Gene: VSAK1_11915: DNA repair protein RecN |
*
Vibrio splendidus LGP32 Site: position = -46 score = 5.16474 sequence = TACTGGGCTTATATACAGTG Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VS_0646: DNA repair protein RecN |
*
Vibrio fischeri ES114 Site: position = -54 score = 5.32505 sequence = TACTGTGTCTATATACAGTG Site: position = -76 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VF_1998: DNA repair protein RecN |
*
Vibrio salmonicida LFI1238 Site: position = -47 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -25 score = 5.51627 sequence = TACTGTTTCTTTATACAGTA Gene: VSAL_I2475: DNA repair protein RecN |
*
Vibrio angustum S14 Site: position = -42 score = 5.50802 sequence = TACTGTATGTAAAAACAGGT Site: position = -64 score = 5.24027 sequence = TACTGGTTATGGATACAGTA Gene: VAS14_07144: DNA repair protein RecN |
*
Photobacterium profundum SS9 Site: position = -64 score = 5.5753 sequence = TACTGTACGTAGATACAGTA Site: position = -42 score = 5.35013 sequence = TACTGTATGAAAACACAGGT Gene: PBPRA0694: DNA repair protein RecN |
DNA repair protein RecN |
| CRON 20. | |||||||||||
| recA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = 69 score = 5.42232 sequence = CACTGTACAAATCAACAGTA Gene: VC0543: Recombinase A |
*
Vibrio vulnificus CMCP6 Site: position = -104 score = 5.42232 sequence = CACTGTACAAATCAACAGTA Gene: VV1_1591: Recombinase A |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -89 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VIBHAR_03513: Recombinase A |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -110 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VP2550: Recombinase A |
*
Vibrio shilonii AK1 Site: position = -131 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VSAK1_02059: Recombinase A |
*
Vibrio splendidus LGP32 Site: position = -94 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VS_2596: Recombinase A |
*
Vibrio fischeri ES114 Site: position = -69 score = 5.74652 sequence = CACTGTACAAATAGACAGTA Gene: VF_0535: Recombinase A |
*
Vibrio salmonicida LFI1238 Site: position = -69 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: VSAL_I0634: Recombinase A |
*
Vibrio angustum S14 Site: position = -78 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: VAS14_20496: Recombinase A |
*
Photobacterium profundum SS9 Site: position = -64 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: PBPRA3068: Recombinase A |
Recombinase A |
| recX |
Gene: VC0544: Regulatory protein RecX |
Gene: VV1_1592: Regulatory protein RecX |
*3
Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03512: Regulatory protein RecX Site: position = -83 score = 5.02571 sequence = AGCTGTGTAAATAATCAGTA Gene: VIBHAR_06801: Regulatory protein RecX Site: position = -83 score = 5.02571 sequence = AGCTGTGTAAATAATCAGTA Gene: VIBHAR_02827: Regulatory protein RecX |
Gene: VP2549: Regulatory protein RecX |
Gene: VSAK1_02064: Regulatory protein RecX |
|
|
|
|
|
Regulatory protein RecX |
| CRON 21. | |||||||||||
| VP2946 |
|
|
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -41 score = 5.17256 sequence = ACCTGTCTTTTTATACAGTT Site: position = -21 score = 5.15929 sequence = AACTGTGAGTATATCCAGTA Gene: VP2946: Hypothetical protein |
|
|
|
|
|
|
Hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |