Statistics of regulated genes

Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	21	17
Vibrio vulnificus CMCP6	25	18
Vibrio harveyi ATCC BAA-1116	27	20
Vibrio parahaemolyticus RIMD 2210633	22	18
Vibrio shilonii AK1	24	17
Vibrio splendidus LGP32	19	16
Vibrio fischeri ES114	17	14
Vibrio salmonicida LFI1238	17	14
Vibrio angustum S14	17	13
Photobacterium profundum SS9	16	12

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes											Function
CRON 1.
mutH	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -174 score = 4.07562 sequence = TACTGTTTATTGATCCATAC Gene: VC0668: DNA mismatch repair endonuclease MutH	* Vibrio vulnificus CMCP6 Site: position = -163 score = 4.63327 sequence = TACTGTTTATTGATCCATGA Gene: VV1_0521: DNA mismatch repair endonuclease MutH	* Vibrio harveyi ATCC BAA-1116 Site: position = -162 score = 4.64305 sequence = CCCTGTTTATTCATCCAGCC Gene: VIBHAR_00966: DNA mismatch repair endonuclease MutH	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -162 score = 4.64305 sequence = CCCTGTTTATTCATCCAGCC Gene: VP0518: DNA mismatch repair endonuclease MutH	* Vibrio shilonii AK1 Site: position = -177 score = 4.92901 sequence = CACTGATTATTCATACAGCA Gene: VSAK1_11158: DNA mismatch repair endonuclease MutH	* Vibrio splendidus LGP32 Site: position = -115 score = 4.86828 sequence = CCCTGTTTATTTATCCACTA Gene: VS_0522: DNA mismatch repair endonuclease MutH	* Vibrio fischeri ES114 Site: position = -140 score = 4.92501 sequence = CACTGTATATGGATCCAGAA Gene: VF_0455: DNA mismatch repair endonuclease MutH	* Vibrio salmonicida LFI1238 Site: position = -137 score = 5.3528 sequence = CACTGTATATAGATCCAGAA Gene: VSAL_I0568: DNA mismatch repair endonuclease MutH	* Vibrio angustum S14 Site: position = -165 score = 4.99209 sequence = GCCTGTCTATTTAAACAGTT Gene: VAS14_07584: DNA mismatch repair endonuclease MutH	Photobacterium profundum SS9 Gene: PBPRA0576: DNA mismatch repair endonuclease MutH	DNA mismatch repair endonuclease MutH
CRON 2.
VC1191	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -39 score = 5.761 sequence = TACTGTATTTACATACAGCA Gene: VC1191: Superfamily II DNA and RNA helicase	* Vibrio vulnificus CMCP6 Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VV1_2796: Superfamily II DNA and RNA helicase	* Vibrio harveyi ATCC BAA-1116 Site: position = -105 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VIBHAR_02055: Superfamily II DNA and RNA helicase	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VP1264: Superfamily II DNA and RNA helicase	* Vibrio shilonii AK1 Site: position = -204 score = 5.05126 sequence = TACAGTATTCTTATACAGTA Site: position = -39 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VSAK1_06160: Superfamily II DNA and RNA helicase	* Vibrio splendidus LGP32 Site: position = 78 score = 5.64468 sequence = TACTGTATACACATACAGCA Gene: VS_1206: Superfamily II DNA and RNA helicase	* Vibrio fischeri ES114 Site: position = -43 score = 5.40131 sequence = TACTGTATAAATACACACTG Gene: VF_1493: Superfamily II DNA and RNA helicase	* Vibrio salmonicida LFI1238 Site: position = -21 score = 5.40131 sequence = TACTGTATAAATACACACTG Gene: VSAL_I1693: Superfamily II DNA and RNA helicase	Vibrio angustum S14	Photobacterium profundum SS9	Superfamily II DNA and RNA helicase
CRON 3.
xerD	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2419: Site-specific recombinase XerD	Vibrio vulnificus CMCP6 Gene: VV1_0530: Site-specific recombinase XerD	* Vibrio harveyi ATCC BAA-1116 Site: position = -32 score = 5.31738 sequence = TACTGTAAATATAAACAGAT Gene: VIBHAR_00956: Site-specific recombinase XerD	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0509: Site-specific recombinase XerD	* Vibrio shilonii AK1 Site: position = -21 score = 5.24511 sequence = TACTGTATAAACATCCAAGA Gene: VSAK1_11208: Site-specific recombinase XerD	Vibrio splendidus LGP32 Gene: VS_0512: Site-specific recombinase XerD	* Vibrio fischeri ES114 Site: position = -51 score = 4.99869 sequence = TACTGTAATTCTAACCAGTG Gene: VF_0448: Site-specific recombinase XerD	* Vibrio salmonicida LFI1238 Site: position = -45 score = 5.21354 sequence = TACTGTAATTCTAACCAGTA Gene: VSAL_I0562: Site-specific recombinase XerD	* Vibrio angustum S14 Site: position = -55 score = 4.54076 sequence = TACTGTGTTTTTATCCATGT Gene: VAS14_07634: Site-specific recombinase XerD	* Photobacterium profundum SS9 Site: position = -78 score = 4.41322 sequence = TACTGTGTTTATATCCATGC Gene: PBPRA0566: Site-specific recombinase XerD	Site-specific recombinase XerD
dsbC	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2418: Thiol:disulfide interchange protein	Vibrio vulnificus CMCP6 Gene: VV1_0529: Thiol:disulfide interchange protein	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00957: Thiol:disulfide interchange protein	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0510: Thiol:disulfide interchange protein	2 Vibrio shilonii AK1 Gene: VSAK1_11203: Thiol:disulfide interchange protein Gene: VSAK1_11198: Thiol:disulfide interchange protein	Vibrio splendidus LGP32 Gene: VS_0513: Thiol:disulfide interchange protein	Vibrio fischeri ES114 Gene: VF_0449: Thiol:disulfide interchange protein	Vibrio salmonicida LFI1238 Gene: VSAL_I0563: Thiol:disulfide interchange protein	Vibrio angustum S14 Gene: VAS14_07629: Thiol:disulfide interchange protein	Photobacterium profundum SS9 Gene: PBPRA0567: Thiol:disulfide interchange protein	Thiol:disulfide interchange protein
recJ	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2417: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio vulnificus CMCP6 Gene: VV1_0528: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00958: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0511: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio shilonii AK1 Gene: VSAK1_11193: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio splendidus LGP32 Gene: VS_0514: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio fischeri ES114 Gene: VF_0450: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio salmonicida LFI1238 Gene: VSAL_I0564: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Vibrio angustum S14 Gene: VAS14_07624: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Photobacterium profundum SS9 Gene: PBPRA0568: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)	Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
CRON 4.
uvrB	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1018: Excinuclease ABC subunit B	* Vibrio vulnificus CMCP6 Site: position = -48 score = 5.31307 sequence = GAGTGTATATTTATACAGTT Gene: VV1_3092: Excinuclease ABC subunit B	* Vibrio harveyi ATCC BAA-1116 Site: position = -46 score = 4.83342 sequence = AGGTGTATATATATACAGCC Gene: VIBHAR_02961: Excinuclease ABC subunit B	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -74 score = 4.9601 sequence = AGGTGTATATATATACAGCG Gene: VP2100: Excinuclease ABC subunit B	2 Vibrio shilonii AK1 Gene: VSAK1_03660: Excinuclease ABC subunit B Gene: VSAK1_06550: Excinuclease ABC subunit B	* Vibrio splendidus LGP32 Site: position = -35 score = 4.99543 sequence = ACCTGATTAAAAAAACAGTA Gene: VS_0980: Excinuclease ABC subunit B	Vibrio fischeri ES114 Gene: VF_0936: Excinuclease ABC subunit B	Vibrio salmonicida LFI1238 Gene: VSAL_I1873: Excinuclease ABC subunit B	2 Vibrio angustum S14 Gene: VAS14_15759: Excinuclease ABC subunit B Gene: VAS14_05553: Excinuclease ABC subunit B	Photobacterium profundum SS9 Gene: PBPRA1118: Excinuclease ABC subunit B	Excinuclease ABC subunit B
CRON 5.
intIA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -40 score = 5.91946 sequence = TACTGTACAAATAACCAGTT Gene: VCA0291: Integron integrase IntI4	* Vibrio vulnificus CMCP6 Site: position = -75 score = 4.26177 sequence = GGCTGTATATATACACATAT Gene: VV1_2401: Integron integrase IntI4	* Vibrio harveyi ATCC BAA-1116 Site: position = -30 score = 5.6887 sequence = AACTGTATAAACAACCAGTC Gene: VIBHAR_02003: Integron integrase IntI4	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -30 score = 5.08349 sequence = ACCTGTATAAATAAACAGAC Gene: VP1865: Integron integrase IntI4	* Vibrio shilonii AK1 Site: position = -32 score = 5.38103 sequence = AACTGTACACAAACACAGTA Gene: VSAK1_25360: Integron integrase IntI4	* Vibrio splendidus LGP32 Site: position = -29 score = 5.18548 sequence = TCATGTACATATAACCAGTT Gene: VS_1890: Integron integrase IntI4	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Integron integrase IntI4
CRON 6.
imuA	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -28 score = 5.81761 sequence = TACTGTATGTATATACAGGT Gene: VV1_2987: Predicted RecA/RadA recombinase	* Vibrio harveyi ATCC BAA-1116 Site: position = -29 score = 5.63035 sequence = TACTGTAAATATATACAGGT Gene: VIBHAR_02866: Predicted RecA/RadA recombinase	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -29 score = 5.88268 sequence = TACTGTATTTATATACAGGT Gene: VP2034: Predicted RecA/RadA recombinase	* Vibrio shilonii AK1 Site: position = -27 score = 5.86424 sequence = TACTGTACATATATACAGGT Gene: VSAK1_26830: Predicted RecA/RadA recombinase	* Vibrio splendidus LGP32 Site: position = -28 score = 6.06561 sequence = TACTGTATAAATATACAGGT Gene: VS_1042: Predicted RecA/RadA recombinase	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Predicted RecA/RadA recombinase
imuB	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_2988: DNA polymerase-like protein PA0670	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_02867: DNA polymerase-like protein PA0670	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2035: DNA polymerase-like protein PA0670	Vibrio shilonii AK1 Gene: VSAK1_26835: DNA polymerase-like protein PA0670	Vibrio splendidus LGP32 Gene: VS_1041: DNA polymerase-like protein PA0670	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	DNA polymerase-like protein PA0670
dnaE2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_2989: DNA polymerase III alpha subunit (EC 2.7.7.7)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_02868: DNA polymerase III alpha subunit (EC 2.7.7.7)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2036: DNA polymerase III alpha subunit (EC 2.7.7.7)	Vibrio shilonii AK1 Gene: VSAK1_26840: DNA polymerase III alpha subunit (EC 2.7.7.7)	Vibrio splendidus LGP32 Gene: VS_1040: DNA polymerase III alpha subunit (EC 2.7.7.7)	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	DNA polymerase III alpha subunit (EC 2.7.7.7)
CRON 7.
VC1368	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -60 score = 5.81335 sequence = AACTGTATTAAAAAACAGTA Site: position = -10 score = 4.74844 sequence = TGCTGTAATTATGTACAGTG Gene: VC1368: Conserved hypothetical protein	* Vibrio vulnificus CMCP6 Site: position = -39 score = 5.39453 sequence = TACTGAGTATACATACAGTT Site: position = -88 score = 5.52879 sequence = GACTGTATAAATGAACAGTA Gene: VV1_2297: Conserved hypothetical protein	* Vibrio harveyi ATCC BAA-1116 Site: position = -39 score = 6.00745 sequence = TACTGTATATGTATACAGTA Gene: VIBHAR_02527: Conserved hypothetical protein	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -39 score = 5.96978 sequence = TACTGTTTTTATATACAGTA Gene: VP1428: Conserved hypothetical protein	* Vibrio shilonii AK1 Site: position = -37 score = 5.2528 sequence = TACTGGTTGTACATACAGCA Site: position = -65 score = 5.61801 sequence = TACTGGATATTCATACAGCA Gene: VSAK1_25105: Conserved hypothetical protein	Vibrio splendidus LGP32 Gene: VS_1790: Conserved hypothetical protein	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Conserved hypothetical protein
CRON 8.
umuD	Vibrio cholerae O1 biovar eltor str. N16961	* Vibrio vulnificus CMCP6 Site: position = -29 score = 5.93004 sequence = AACTGTATATATGTACAGTT Gene: VV1_0390: DNA polymerase V, subunit UmuD	* Vibrio harveyi ATCC BAA-1116 Site: position = -26 score = 6.33839 sequence = TACTGTATATATAAACAGTA Gene: VIBHAR_p08270: DNA polymerase V, subunit UmuD	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	* Vibrio fischeri ES114 Site: position = -27 score = 5.2138 sequence = CGCTGTACTTATATACAGTG Gene: VF_1269: DNA polymerase V, subunit UmuD	Vibrio salmonicida LFI1238	* Vibrio angustum S14 Site: position = -10 score = 5.88678 sequence = AACTGTATAAATGTACAGTT Gene: VAS14_12359: DNA polymerase V, subunit UmuD	* Photobacterium profundum SS9 Site: position = -4 score = 5.41228 sequence = AACTGTGCATACATACAGTG Gene: PBPRB0973: DNA polymerase V, subunit UmuD	DNA polymerase V, subunit UmuD
umuC	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6 Gene: VV1_0391: DNA polymerase V, subunit UmuC	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_p08269: DNA polymerase V, subunit UmuC	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14 Gene: VAS14_12354: DNA polymerase V, subunit UmuC	Photobacterium profundum SS9 Gene: PBPRB0972: DNA polymerase V, subunit UmuC	DNA polymerase V, subunit UmuC
CRON 9.
recG	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VC2711: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	*2 Vibrio vulnificus CMCP6 Site: position = -65 score = 4.73978 sequence = TCCTGTACAAAAACACAGCC Gene: VV1_0854: ATP-dependent DNA helicase RecG (EC 3.6.1.-) Gene: VV1_0855: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	* Vibrio harveyi ATCC BAA-1116 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VIBHAR_00625: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -65 score = 5.03263 sequence = TCCTGTACAAAAACACAGCT Gene: VP0157: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	* Vibrio shilonii AK1 Site: position = -64 score = 5.67315 sequence = AACTGTACAAAAAGACAGTA Gene: VSAK1_09763: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	* Vibrio splendidus LGP32 Site: position = -52 score = 5.16613 sequence = GCCTGTACAAAAATCCAGTA Gene: VS_0158: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Vibrio fischeri ES114 Gene: VF_2460: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Vibrio salmonicida LFI1238 Gene: VSAL_I2910: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Vibrio angustum S14 Gene: VAS14_21732: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	Photobacterium profundum SS9 Gene: PBPRA0187: ATP-dependent DNA helicase RecG (EC 3.6.1.-)	ATP-dependent DNA helicase RecG (EC 3.6.1.-)
CRON 10.
dinB	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -30 score = 5.76819 sequence = TACTGTTTATGTATACAGTA Gene: VC2287: DNA polymerase IV (EC 2.7.7.7)	* Vibrio vulnificus CMCP6 Site: position = -37 score = 5.11805 sequence = TACTGTGTTTTTGTCCAGTT Gene: VV1_1830: DNA polymerase IV (EC 2.7.7.7)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03264: DNA polymerase IV (EC 2.7.7.7)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -31 score = 5.64967 sequence = TACTGTATTTTTAACCAGTG Gene: VP2342: DNA polymerase IV (EC 2.7.7.7)	* Vibrio shilonii AK1 Site: position = -24 score = 6.20361 sequence = AACTGTATAAATAAACAGTT Gene: VSAK1_12155: DNA polymerase IV (EC 2.7.7.7)	* Vibrio splendidus LGP32 Site: position = -41 score = 5.93456 sequence = TACTGTTTATAAATACAGTT Gene: VS_0702: DNA polymerase IV (EC 2.7.7.7)	* Vibrio fischeri ES114 Site: position = -27 score = 5.57126 sequence = AACTGTGTTTTTATACAGTT Gene: VF_0734: DNA polymerase IV (EC 2.7.7.7)	*2 Vibrio salmonicida LFI1238 Site: position = -68 score = 5.79745 sequence = AACTGTGTATTTATACAGTT Gene: VSAL_I0957: DNA polymerase IV (EC 2.7.7.7) Site: position = -132 score = 5.77174 sequence = GACTGTATATTTAAACAGTT Gene: VSAL_I0965: DNA polymerase IV (EC 2.7.7.7)	* Vibrio angustum S14 Site: position = -30 score = 5.65073 sequence = AGCTGTATGTATAAACAGTA Gene: VAS14_16776: DNA polymerase IV (EC 2.7.7.7)	* Photobacterium profundum SS9 Site: position = -64 score = 6.07698 sequence = TACTGTATATAAAAACAGTT Gene: PBPRA0832: DNA polymerase IV (EC 2.7.7.7)	DNA polymerase IV (EC 2.7.7.7)
CRON 11.
rmuC	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -56 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VC0082: DNA recombination protein RmuC	* Vibrio vulnificus CMCP6 Site: position = -67 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VV1_0910: DNA recombination protein RmuC	* Vibrio harveyi ATCC BAA-1116 Site: position = -67 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VIBHAR_00561: DNA recombination protein RmuC	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -67 score = 5.48136 sequence = AACTGGACATTTATCCAGTG Gene: VP0094: DNA recombination protein RmuC	* Vibrio shilonii AK1 Site: position = -170 score = 5.27746 sequence = ATCTGGACATTTATCCAGTA Gene: VSAK1_13165: DNA recombination protein RmuC	* Vibrio splendidus LGP32 Site: position = -68 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VS_0097: DNA recombination protein RmuC	* Vibrio fischeri ES114 Site: position = -62 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VF_0044: DNA recombination protein RmuC	* Vibrio salmonicida LFI1238 Site: position = -62 score = 5.69621 sequence = AACTGGACATTTATCCAGTA Gene: VSAL_I2995: DNA recombination protein RmuC	* Vibrio angustum S14 Site: position = -73 score = 5.34265 sequence = AGCTGGACATTTATCCAGTA Gene: VAS14_22754: DNA recombination protein RmuC	* Photobacterium profundum SS9 Site: position = -68 score = 5.38549 sequence = TGCTGGACATTTATCCAGTA Gene: PBPRA0115: DNA recombination protein RmuC	DNA recombination protein RmuC
CRON 12.
lexA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 4.96964 sequence = CACTGGATATACTCACAGTC Gene: VC0092: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio vulnificus CMCP6 Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Gene: VV1_1166: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio harveyi ATCC BAA-1116 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VIBHAR_00268: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VP2945: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio shilonii AK1 Site: position = -25 score = 5.66447 sequence = AACTGTATAAACAGACAGGT Site: position = -45 score = 5.44471 sequence = TACTGGATATACTCACAGTT Gene: VSAK1_12472: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio splendidus LGP32 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.15185 sequence = TACTGGATATACTCACAGTC Gene: VS_3006: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio fischeri ES114 Site: position = -25 score = 5.66447 sequence = AACTGTATAAACAGACAGGT Site: position = -45 score = 5.086 sequence = AGCTGTATATACTCACAGTG Gene: VF_2442: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio salmonicida LFI1238 Site: position = -25 score = 5.5251 sequence = CACTGTATAAACAGACAGGT Site: position = -45 score = 5.25217 sequence = AGCTGTATATACTCACAGTT Gene: VSAL_I2893: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Vibrio angustum S14 Site: position = -25 score = 5.59141 sequence = AACTGTATAAAAAGACAGGT Site: position = -45 score = 5.09633 sequence = CACTGGATATACTCACAGTG Gene: VAS14_21837: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Photobacterium profundum SS9 Site: position = -65 score = 5.31025 sequence = GACTGTATAAACAAACAGGG Site: position = -85 score = 5.31117 sequence = CACTGGATATACTCACAGTA Gene: PBPRA0165: SOS-response repressor and protease LexA (EC 3.4.21.88)	SOS-response repressor and protease LexA (EC 3.4.21.88)
CRON 13.
ruvA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -71 score = 5.17668 sequence = TACTGGCTATCCATCCAGTT Gene: VC1846: Holliday junction DNA helicase RuvA	* Vibrio vulnificus CMCP6 Site: position = -63 score = 5.42845 sequence = AACTGGATGTCTATCCAGTT Gene: VV1_2159: Holliday junction DNA helicase RuvA	* Vibrio harveyi ATCC BAA-1116 Site: position = -6 score = 5.11864 sequence = GACTGGATGTCTATCCAGTT Gene: VIBHAR_01600: Holliday junction DNA helicase RuvA	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -63 score = 5.11864 sequence = GACTGGATGTCTATCCAGTT Gene: VP1051: Holliday junction DNA helicase RuvA	* Vibrio shilonii AK1 Site: position = -66 score = 5.3772 sequence = AACTGGATACCTATCCAGTT Gene: VSAK1_00385: Holliday junction DNA helicase RuvA	* Vibrio splendidus LGP32 Site: position = -67 score = 5.58643 sequence = AACTGGATAAGTATCCAGTT Gene: VS_1107: Holliday junction DNA helicase RuvA	* Vibrio fischeri ES114 Site: position = -66 score = 5.76256 sequence = TACTGGATATCTATCCAGTT Gene: VF_0951: Holliday junction DNA helicase RuvA	* Vibrio salmonicida LFI1238 Site: position = -66 score = 5.76256 sequence = TACTGGATATCTATCCAGTT Gene: VSAL_I1888: Holliday junction DNA helicase RuvA	* Vibrio angustum S14 Site: position = -66 score = 5.42845 sequence = AACTGGATGTCTATCCAGTT Gene: VAS14_18066: Holliday junction DNA helicase RuvA	* Photobacterium profundum SS9 Site: position = -65 score = 5.00963 sequence = TGCTGGATATCCATCCAGCA Gene: PBPRA1116: Holliday junction DNA helicase RuvA	Holliday junction DNA helicase RuvA
ruvB	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1845: Holliday junction DNA helicase RuvB	2 Vibrio vulnificus CMCP6 Gene: VV1_2161: Holliday junction DNA helicase RuvB Gene: VV1_2160: Holliday junction DNA helicase RuvB	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_01601: Holliday junction DNA helicase RuvB	Vibrio parahaemolyticus RIMD 2210633 Gene: VP1052: Holliday junction DNA helicase RuvB	Vibrio shilonii AK1 Gene: VSAK1_00390: Holliday junction DNA helicase RuvB	Vibrio splendidus LGP32 Gene: VS_1108: Holliday junction DNA helicase RuvB	Vibrio fischeri ES114 Gene: VF_0952: Holliday junction DNA helicase RuvB	Vibrio salmonicida LFI1238 Gene: VSAL_I1889: Holliday junction DNA helicase RuvB	Vibrio angustum S14 Gene: VAS14_18071: Holliday junction DNA helicase RuvB	Photobacterium profundum SS9 Gene: PBPRA1117: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB
CRON 14.
uvrA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -85 score = 5.67925 sequence = AACTGTTTTTTTATCCAGTA Gene: VC0394: Excinuclease ABC subunit A	* Vibrio vulnificus CMCP6 Site: position = -88 score = 5.67925 sequence = AACTGTTTTTTTATCCAGTA Gene: VV1_1427: Excinuclease ABC subunit A	* Vibrio harveyi ATCC BAA-1116 Site: position = -86 score = 5.30842 sequence = TACTGTTTTTTTGTCCAGTA Gene: VIBHAR_03708: Excinuclease ABC subunit A	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -85 score = 5.30842 sequence = TACTGTTTTTTTGTCCAGTA Gene: VP2712: Excinuclease ABC subunit A	* Vibrio shilonii AK1 Site: position = -84 score = 5.3458 sequence = ACCTGTTTTTTTATCCAGTA Gene: VSAK1_08166: Excinuclease ABC subunit A	* Vibrio splendidus LGP32 Site: position = -84 score = 5.7221 sequence = TACTGTTTTTTTATCCAGTA Gene: VS_0320: Excinuclease ABC subunit A	* Vibrio fischeri ES114 Site: position = -90 score = 5.53989 sequence = CACTGTTTTTTTATCCAGTA Gene: VF_0341: Excinuclease ABC subunit A	* Vibrio salmonicida LFI1238 Site: position = -88 score = 5.7221 sequence = TACTGTTTTTTTATCCAGTA Gene: VSAL_I0447: Excinuclease ABC subunit A	* Vibrio angustum S14 Site: position = -87 score = 4.95924 sequence = TACTGTGTTTTTACTCAGTA Gene: VAS14_19446: Excinuclease ABC subunit A	* Photobacterium profundum SS9 Site: position = -91 score = 5.44717 sequence = TACTGTATCTTTATACAGCA Gene: PBPRA3290: Excinuclease ABC subunit A	Excinuclease ABC subunit A
CRON 15.
uvrD	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -28 score = 5.13539 sequence = TTATGTATAAATAACCAGTG Gene: VC0190: ATP-dependent DNA helicase II	* Vibrio vulnificus CMCP6 Site: position = -30 score = 5.79402 sequence = TTCTGTATAAATAACCAGTA Gene: VV1_0949: ATP-dependent DNA helicase II	* Vibrio harveyi ATCC BAA-1116 Site: position = -29 score = 5.35024 sequence = TTATGTATAAATAACCAGTA Gene: VIBHAR_00351: ATP-dependent DNA helicase II	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -27 score = 5.35024 sequence = TTATGTATAAATAACCAGTA Gene: VP3013: ATP-dependent DNA helicase II	* Vibrio shilonii AK1 Site: position = -30 score = 5.30739 sequence = ATATGTATAAATAACCAGTA Gene: VSAK1_24239: ATP-dependent DNA helicase II	* Vibrio splendidus LGP32 Site: position = -33 score = 5.2356 sequence = TTATGTATAAATACCCAGTA Gene: VS_3084: ATP-dependent DNA helicase II	* Vibrio fischeri ES114 Site: position = -27 score = 5.17783 sequence = ACATGTATAAATAACCAGTG Gene: VF_0068: ATP-dependent DNA helicase II	* Vibrio salmonicida LFI1238 Site: position = -27 score = 5.17783 sequence = ACATGTATAAATAACCAGTG Gene: VSAL_I0222: ATP-dependent DNA helicase II	* Vibrio angustum S14 Site: position = -27 score = 5.43893 sequence = CATTGTATAAATAACCAGTA Gene: VAS14_22899: ATP-dependent DNA helicase II	* Photobacterium profundum SS9 Site: position = -27 score = 5.43893 sequence = CATTGTATAAATAACCAGTA Gene: PBPRA3513: ATP-dependent DNA helicase II	ATP-dependent DNA helicase II
CRON 16.
yebG	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -49 score = 5.85979 sequence = AACTGTATAAACAGCCAGTT Gene: VC2326: SOS regulon DNA damage-inducible protein	* Vibrio vulnificus CMCP6 Site: position = -54 score = 5.64441 sequence = AGCTGTATAAACACACAGTA Gene: VV1_1791: SOS regulon DNA damage-inducible protein	* Vibrio harveyi ATCC BAA-1116 Site: position = -53 score = 5.83541 sequence = AACTGTATAAAAAGCCAGTA Gene: VIBHAR_03306: SOS regulon DNA damage-inducible protein	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -47 score = 5.83541 sequence = AACTGTATAAAAAGCCAGTA Gene: VP2379: SOS regulon DNA damage-inducible protein	* Vibrio shilonii AK1 Site: position = -57 score = 5.57209 sequence = ATCTGTATAAACAGACAGTA Gene: VSAK1_08581: SOS regulon DNA damage-inducible protein	* Vibrio splendidus LGP32 Site: position = -48 score = 5.62056 sequence = AACTGTATAAAAAGCCAGTG Gene: VS_0670: SOS regulon DNA damage-inducible protein	* Vibrio fischeri ES114 Site: position = -41 score = 5.50538 sequence = TACTGTATAAAACACCAGTT Gene: VF_0577: SOS regulon DNA damage-inducible protein	* Vibrio salmonicida LFI1238 Site: position = -41 score = 5.50538 sequence = TACTGTATAAAACACCAGTT Gene: VSAL_I0676: SOS regulon DNA damage-inducible protein	* Vibrio angustum S14 Site: position = -44 score = 5.95131 sequence = TACTGTATAAACAGCCAGTA Gene: VAS14_20761: SOS regulon DNA damage-inducible protein	* Photobacterium profundum SS9 Site: position = -38 score = 5.52352 sequence = TACTGTATAAGCAGCCAGTA Gene: PBPRA3003: SOS regulon DNA damage-inducible protein	SOS regulon DNA damage-inducible protein
CRON 17.
topB	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -84 score = 5.51335 sequence = TACTGGTTAAATTTACAGTT Gene: VC2043: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio vulnificus CMCP6 Site: position = -87 score = 5.75784 sequence = AACTGTCTATACATACAGTT Gene: VV1_3130: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio harveyi ATCC BAA-1116 Site: position = -84 score = 5.05334 sequence = TACTGTTTACCTGTACAGTT Gene: VIBHAR_03041: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -85 score = 5.73735 sequence = TACTGTTCATTTATACAGTT Gene: VP2149: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio shilonii AK1 Site: position = -90 score = 5.52833 sequence = AACTGGCTATTTATACAGTT Gene: VSAK1_03504: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio splendidus LGP32 Site: position = -85 score = 5.98156 sequence = AACTGTATAAACAACCAGTT Gene: VS_0940: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio fischeri ES114 Site: position = -29 score = 5.31483 sequence = AACTGTCTATTCATACAGGT Gene: VF_1641: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio salmonicida LFI1238 Site: position = -57 score = 4.90115 sequence = AACTGTCTATTCGTACAGGT Gene: VSAL_I2155: DNA topoisomerase III (EC 5.99.1.2)	* Vibrio angustum S14 Site: position = -86 score = 5.6407 sequence = AACTGGTTTTATATCCAGTA Gene: VAS14_05738: DNA topoisomerase III (EC 5.99.1.2)	* Photobacterium profundum SS9 Site: position = -88 score = 5.22896 sequence = AACTGTTGTTATATCCAGTA Gene: PBPRA2590: DNA topoisomerase III (EC 5.99.1.2)	DNA topoisomerase III (EC 5.99.1.2)
CRON 18.
rstA	*2 Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -89 score = 3.97129 sequence = GGCTGTTTTTTTGTACATTA Gene: VC1463: RstA phage-related replication protein Site: position = -89 score = 3.97129 sequence = GGCTGTTTTTTTGTACATTA Gene: VC1454: RstA phage-related replication protein	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	RstA phage-related replication protein
rstB	2 Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC1453: RstB phage-related integrase Gene: VC1462: RstB phage-related integrase	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	Vibrio parahaemolyticus RIMD 2210633	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	RstB phage-related integrase
CRON 19.
recN	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -26 score = 4.72585 sequence = TATTGGTTAATCATACAGGT Site: position = -66 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -44 score = 5.97019 sequence = AACTGTTTAAACATACAGTA Gene: VC0852: DNA repair protein RecN	* Vibrio vulnificus CMCP6 Site: position = -46 score = 5.73765 sequence = TACTGAATTTATATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VV1_0367: DNA repair protein RecN	* Vibrio harveyi ATCC BAA-1116 Site: position = -46 score = 5.46196 sequence = TACTGTTTTCTTATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VIBHAR_01130: DNA repair protein RecN	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -46 score = 5.38264 sequence = TACTGTTCTCATATACAGTA Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VP0648: DNA repair protein RecN	* Vibrio shilonii AK1 Site: position = -28 score = 4.91903 sequence = TAATGTTCATTTAAACAGGT Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -46 score = 5.59797 sequence = TACTGAATTTACATACAGTA Gene: VSAK1_11915: DNA repair protein RecN	* Vibrio splendidus LGP32 Site: position = -46 score = 5.16474 sequence = TACTGGGCTTATATACAGTG Site: position = -68 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VS_0646: DNA repair protein RecN	* Vibrio fischeri ES114 Site: position = -54 score = 5.32505 sequence = TACTGTGTCTATATACAGTG Site: position = -76 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Gene: VF_1998: DNA repair protein RecN	* Vibrio salmonicida LFI1238 Site: position = -47 score = 5.97109 sequence = TACTGTATAAAGAAACAGTA Site: position = -25 score = 5.51627 sequence = TACTGTTTCTTTATACAGTA Gene: VSAL_I2475: DNA repair protein RecN	* Vibrio angustum S14 Site: position = -42 score = 5.50802 sequence = TACTGTATGTAAAAACAGGT Site: position = -64 score = 5.24027 sequence = TACTGGTTATGGATACAGTA Gene: VAS14_07144: DNA repair protein RecN	* Photobacterium profundum SS9 Site: position = -64 score = 5.5753 sequence = TACTGTACGTAGATACAGTA Site: position = -42 score = 5.35013 sequence = TACTGTATGAAAACACAGGT Gene: PBPRA0694: DNA repair protein RecN	DNA repair protein RecN
CRON 20.
recA	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = 69 score = 5.42232 sequence = CACTGTACAAATCAACAGTA Gene: VC0543: Recombinase A	* Vibrio vulnificus CMCP6 Site: position = -104 score = 5.42232 sequence = CACTGTACAAATCAACAGTA Gene: VV1_1591: Recombinase A	* Vibrio harveyi ATCC BAA-1116 Site: position = -89 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VIBHAR_03513: Recombinase A	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -110 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VP2550: Recombinase A	* Vibrio shilonii AK1 Site: position = -131 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VSAK1_02059: Recombinase A	* Vibrio splendidus LGP32 Site: position = -94 score = 5.37569 sequence = CACTGTATGAATCAACAGTA Gene: VS_2596: Recombinase A	* Vibrio fischeri ES114 Site: position = -69 score = 5.74652 sequence = CACTGTACAAATAGACAGTA Gene: VF_0535: Recombinase A	* Vibrio salmonicida LFI1238 Site: position = -69 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: VSAL_I0634: Recombinase A	* Vibrio angustum S14 Site: position = -78 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: VAS14_20496: Recombinase A	* Photobacterium profundum SS9 Site: position = -64 score = 5.6999 sequence = CACTGTATGAATAGACAGTA Gene: PBPRA3068: Recombinase A	Recombinase A
recX	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0544: Regulatory protein RecX	Vibrio vulnificus CMCP6 Gene: VV1_1592: Regulatory protein RecX	*3 Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_03512: Regulatory protein RecX Site: position = -83 score = 5.02571 sequence = AGCTGTGTAAATAATCAGTA Gene: VIBHAR_06801: Regulatory protein RecX Site: position = -83 score = 5.02571 sequence = AGCTGTGTAAATAATCAGTA Gene: VIBHAR_02827: Regulatory protein RecX	Vibrio parahaemolyticus RIMD 2210633 Gene: VP2549: Regulatory protein RecX	Vibrio shilonii AK1 Gene: VSAK1_02064: Regulatory protein RecX	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Regulatory protein RecX
CRON 21.
VP2946	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -41 score = 5.17256 sequence = ACCTGTCTTTTTATACAGTT Site: position = -21 score = 5.15929 sequence = AACTGTGAGTATATCCAGTA Gene: VP2946: Hypothetical protein	Vibrio shilonii AK1	Vibrio splendidus LGP32	Vibrio fischeri ES114	Vibrio salmonicida LFI1238	Vibrio angustum S14	Photobacterium profundum SS9	Hypothetical protein

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