Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV1_1166
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 25
- Operons 18
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -45
Score: 5.4
Sequence: TACTGGATATACTCACAGTT
Position: -25
Score: 5.6
Sequence: AACTGTATAAAAAGACAGGT
Locus tag: VV1_1166
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VV1_1166
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -104
Score: 5.4
Sequence: CACTGTACAAATCAACAGTA
Locus tag: VV1_1591
Name: recA
Funciton: Recombinase A
Locus tag: VV1_1592
Name: recX
Funciton: Regulatory protein RecX
VV1_1591
recA
Recombinase A
VV1_1592
recX
Regulatory protein RecX
Position: -87
Score: 5.8
Sequence: AACTGTCTATACATACAGTT
Locus tag: VV1_3130
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VV1_3130
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -68
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.7
Sequence: TACTGAATTTATATACAGTA
Locus tag: VV1_0367
Name: recN
Funciton: DNA repair protein RecN
VV1_0367
recN
DNA repair protein RecN
Position: -67
Score: 5.7
Sequence: AACTGGACATTTATCCAGTA
Locus tag: VV1_0910
Name: rmuC
Funciton: DNA recombination protein RmuC
VV1_0910
rmuC
DNA recombination protein RmuC
Position: -39
Score: 5.6
Sequence: TACTGTATACACATACAGCA
Locus tag: VV1_2796
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VV1_2796
VC1191
Superfamily II DNA and RNA helicase
Position: -48
Score: 5.3
Sequence: GAGTGTATATTTATACAGTT
Locus tag: VV1_3092
Name: uvrB
Funciton: Excinuclease ABC subunit B
VV1_3092
uvrB
Excinuclease ABC subunit B
Position: -75
Score: 4.3
Sequence: GGCTGTATATATACACATAT
Locus tag: VV1_2401
Name: intIA
Funciton: Integron integrase IntI4
VV1_2401
intIA
Integron integrase IntI4
Position: -28
Score: 5.8
Sequence: TACTGTATGTATATACAGGT
Locus tag: VV1_2987
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: VV1_2988
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: VV1_2989
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
VV1_2987
imuA
Predicted RecA/RadA recombinase
VV1_2988
imuB
DNA polymerase-like protein PA0670
VV1_2989
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -88
Score: 5.5
Sequence: GACTGTATAAATGAACAGTA
Position: -39
Score: 5.4
Sequence: TACTGAGTATACATACAGTT
Locus tag: VV1_2297
Name: VC1368
Funciton: Conserved hypothetical protein
VV1_2297
VC1368
Conserved hypothetical protein
Position: -29
Score: 5.9
Sequence: AACTGTATATATGTACAGTT
Locus tag: VV1_0390
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: VV1_0391
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
VV1_0390
umuD
DNA polymerase V, subunit UmuD
VV1_0391
umuC
DNA polymerase V, subunit UmuC
Position: -65
Score: 4.7
Sequence: TCCTGTACAAAAACACAGCC
Locus tag: VV1_0854
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Locus tag: VV1_0855
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
VV1_0854
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
VV1_0855
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -163
Score: 4.6
Sequence: TACTGTTTATTGATCCATGA
Locus tag: VV1_0521
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VV1_0521
mutH
DNA mismatch repair endonuclease MutH
Position: -37
Score: 5.1
Sequence: TACTGTGTTTTTGTCCAGTT
Locus tag: VV1_1830
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VV1_1830
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -63
Score: 5.4
Sequence: AACTGGATGTCTATCCAGTT
Locus tag: VV1_2159
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VV1_2160
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
Locus tag: VV1_2161
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VV1_2159
ruvA
Holliday junction DNA helicase RuvA
VV1_2160
ruvB
Holliday junction DNA helicase RuvB
VV1_2161
ruvB
Holliday junction DNA helicase RuvB
Position: -88
Score: 5.7
Sequence: AACTGTTTTTTTATCCAGTA
Locus tag: VV1_1427
Name: uvrA
Funciton: Excinuclease ABC subunit A
VV1_1427
uvrA
Excinuclease ABC subunit A
Position: -30
Score: 5.8
Sequence: TTCTGTATAAATAACCAGTA
Locus tag: VV1_0949
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VV1_0949
uvrD
ATP-dependent DNA helicase II
Position: -54
Score: 5.6
Sequence: AGCTGTATAAACACACAGTA
Locus tag: VV1_1791
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VV1_1791
yebG
SOS regulon DNA damage-inducible protein
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