Regulon of LexA in Vibrio vulnificus CMCP6
| Regulator type: | Transcription factor |
| TF locus tag: | VV1_1166 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 25 |
| - Operons | 18 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Vibrionales
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -45
Score: 5.4 Sequence: TACTGGATATACTCACAGTT
Position: -25
Score: 5.6 Sequence: AACTGTATAAAAAGACAGGT
Locus tag: VV1_1166
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -104
Score: 5.4 Sequence: CACTGTACAAATCAACAGTA
Locus tag: VV1_1591
Name: recA Funciton: Recombinase A
Locus tag: VV1_1592
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -87
Score: 5.8 Sequence: AACTGTCTATACATACAGTT
Locus tag: VV1_3130
Name: topB Funciton: DNA topoisomerase III (EC 5.99.1.2) |
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topB
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DNA topoisomerase III (EC 5.99.1.2)
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Position: -68
Score: 6 Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.7 Sequence: TACTGAATTTATATACAGTA
Locus tag: VV1_0367
Name: recN Funciton: DNA repair protein RecN |
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recN
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DNA repair protein RecN
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Position: -67
Score: 5.7 Sequence: AACTGGACATTTATCCAGTA
Locus tag: VV1_0910
Name: rmuC Funciton: DNA recombination protein RmuC |
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rmuC
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DNA recombination protein RmuC
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Position: -39
Score: 5.6 Sequence: TACTGTATACACATACAGCA
Locus tag: VV1_2796
Name: VC1191 Funciton: Superfamily II DNA and RNA helicase |
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VC1191
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Superfamily II DNA and RNA helicase
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Position: -48
Score: 5.3 Sequence: GAGTGTATATTTATACAGTT
Locus tag: VV1_3092
Name: uvrB Funciton: Excinuclease ABC subunit B |
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uvrB
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Excinuclease ABC subunit B
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Position: -75
Score: 4.3 Sequence: GGCTGTATATATACACATAT
Locus tag: VV1_2401
Name: intIA Funciton: Integron integrase IntI4 |
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intIA
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Integron integrase IntI4
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Position: -28
Score: 5.8 Sequence: TACTGTATGTATATACAGGT
Locus tag: VV1_2987
Name: imuA Funciton: Predicted RecA/RadA recombinase
Locus tag: VV1_2988
Name: imuB Funciton: DNA polymerase-like protein PA0670
Locus tag: VV1_2989
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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imuA
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Predicted RecA/RadA recombinase
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imuB
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DNA polymerase-like protein PA0670
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -88
Score: 5.5 Sequence: GACTGTATAAATGAACAGTA
Position: -39
Score: 5.4 Sequence: TACTGAGTATACATACAGTT
Locus tag: VV1_2297
Name: VC1368 Funciton: Conserved hypothetical protein |
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VC1368
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Conserved hypothetical protein
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Position: -29
Score: 5.9 Sequence: AACTGTATATATGTACAGTT
Locus tag: VV1_0390
Name: umuD Funciton: DNA polymerase V, subunit UmuD
Locus tag: VV1_0391
Name: umuC Funciton: DNA polymerase V, subunit UmuC |
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umuD
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DNA polymerase V, subunit UmuD
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umuC
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DNA polymerase V, subunit UmuC
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Position: -65
Score: 4.7 Sequence: TCCTGTACAAAAACACAGCC
Locus tag: VV1_0854
Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Locus tag: VV1_0855
Name: recG Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-) |
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recG
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ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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recG
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ATP-dependent DNA helicase RecG (EC 3.6.1.-)
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Position: -163
Score: 4.6 Sequence: TACTGTTTATTGATCCATGA
Locus tag: VV1_0521
Name: mutH Funciton: DNA mismatch repair endonuclease MutH |
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mutH
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DNA mismatch repair endonuclease MutH
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Position: -37
Score: 5.1 Sequence: TACTGTGTTTTTGTCCAGTT
Locus tag: VV1_1830
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -63
Score: 5.4 Sequence: AACTGGATGTCTATCCAGTT
Locus tag: VV1_2159
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: VV1_2160
Name: ruvB Funciton: Holliday junction DNA helicase RuvB
Locus tag: VV1_2161
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -88
Score: 5.7 Sequence: AACTGTTTTTTTATCCAGTA
Locus tag: VV1_1427
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -30
Score: 5.8 Sequence: TTCTGTATAAATAACCAGTA
Locus tag: VV1_0949
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -54
Score: 5.6 Sequence: AGCTGTATAAACACACAGTA
Locus tag: VV1_1791
Name: yebG Funciton: SOS regulon DNA damage-inducible protein |
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yebG
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SOS regulon DNA damage-inducible protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |