Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio salmonicida LFI1238

Properties
Regulator type: Transcription factor
TF locus tag: VSAL_I2893
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 17
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -57
Score: 4.9
Sequence: AACTGTCTATTCGTACAGGT
Locus tag: VSAL_I2155
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VSAL_I2155
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -62
Score: 5.7
Sequence: AACTGGACATTTATCCAGTA
Locus tag: VSAL_I2995
Name: rmuC
Funciton: DNA recombination protein RmuC
VSAL_I2995
rmuC
DNA recombination protein RmuC
Position: -69
Score: 5.7
Sequence: CACTGTATGAATAGACAGTA
Locus tag: VSAL_I0634
Name: recA
Funciton: Recombinase A
VSAL_I0634
recA
Recombinase A
Position: -47
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -25
Score: 5.5
Sequence: TACTGTTTCTTTATACAGTA
Locus tag: VSAL_I2475
Name: recN
Funciton: DNA repair protein RecN
VSAL_I2475
recN
DNA repair protein RecN
Position: -137
Score: 5.4
Sequence: CACTGTATATAGATCCAGAA
Locus tag: VSAL_I0568
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VSAL_I0568
mutH
DNA mismatch repair endonuclease MutH
Position: -21
Score: 5.4
Sequence: TACTGTATAAATACACACTG
Locus tag: VSAL_I1693
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VSAL_I1693
VC1191
Superfamily II DNA and RNA helicase
Position: -45
Score: 5.2
Sequence: TACTGTAATTCTAACCAGTA
Locus tag: VSAL_I0562
Name: xerD
Funciton: Site-specific recombinase XerD
Locus tag: VSAL_I0563
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: VSAL_I0564
Name: recJ
Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
VSAL_I0562
xerD
Site-specific recombinase XerD
VSAL_I0563
dsbC
Thiol:disulfide interchange protein
VSAL_I0564
recJ
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Position: -68
Score: 5.8
Sequence: AACTGTGTATTTATACAGTT
Locus tag: VSAL_I0957
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VSAL_I0957
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -132
Score: 5.8
Sequence: GACTGTATATTTAAACAGTT
Locus tag: VSAL_I0965
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VSAL_I0965
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -45
Score: 5.3
Sequence: AGCTGTATATACTCACAGTT
Position: -25
Score: 5.5
Sequence: CACTGTATAAACAGACAGGT
Locus tag: VSAL_I2893
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VSAL_I2893
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -66
Score: 5.8
Sequence: TACTGGATATCTATCCAGTT
Locus tag: VSAL_I1888
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VSAL_I1889
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VSAL_I1888
ruvA
Holliday junction DNA helicase RuvA
VSAL_I1889
ruvB
Holliday junction DNA helicase RuvB
Position: -88
Score: 5.7
Sequence: TACTGTTTTTTTATCCAGTA
Locus tag: VSAL_I0447
Name: uvrA
Funciton: Excinuclease ABC subunit A
VSAL_I0447
uvrA
Excinuclease ABC subunit A
Position: -27
Score: 5.2
Sequence: ACATGTATAAATAACCAGTG
Locus tag: VSAL_I0222
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VSAL_I0222
uvrD
ATP-dependent DNA helicase II
Position: -41
Score: 5.5
Sequence: TACTGTATAAAACACCAGTT
Locus tag: VSAL_I0676
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VSAL_I0676
yebG
SOS regulon DNA damage-inducible protein
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