Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio splendidus LGP32

Properties
Regulator type: Transcription factor
TF locus tag: VS_3006
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 19
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -48
Score: 5.6
Sequence: AACTGTATAAAAAGCCAGTG
Locus tag: VS_0670
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VS_0670
yebG
SOS regulon DNA damage-inducible protein
Position: -85
Score: 6
Sequence: AACTGTATAAACAACCAGTT
Locus tag: VS_0940
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VS_0940
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -94
Score: 5.4
Sequence: CACTGTATGAATCAACAGTA
Locus tag: VS_2596
Name: recA
Funciton: Recombinase A
VS_2596
recA
Recombinase A
Position: -45
Score: 5.2
Sequence: TACTGGATATACTCACAGTC
Position: -25
Score: 5.6
Sequence: AACTGTATAAAAAGACAGGT
Locus tag: VS_3006
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VS_3006
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -68
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.2
Sequence: TACTGGGCTTATATACAGTG
Locus tag: VS_0646
Name: recN
Funciton: DNA repair protein RecN
VS_0646
recN
DNA repair protein RecN
Position: 78
Score: 5.6
Sequence: TACTGTATACACATACAGCA
Locus tag: VS_1206
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VS_1206
VC1191
Superfamily II DNA and RNA helicase
Position: -35
Score: 5
Sequence: ACCTGATTAAAAAAACAGTA
Locus tag: VS_0980
Name: uvrB
Funciton: Excinuclease ABC subunit B
VS_0980
uvrB
Excinuclease ABC subunit B
Position: -28
Score: 6.1
Sequence: TACTGTATAAATATACAGGT
Locus tag: VS_1042
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: VS_1041
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: VS_1040
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
VS_1042
imuA
Predicted RecA/RadA recombinase
VS_1041
imuB
DNA polymerase-like protein PA0670
VS_1040
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -29
Score: 5.2
Sequence: TCATGTACATATAACCAGTT
Locus tag: VS_1890
Name: intIA
Funciton: Integron integrase IntI4
VS_1890
intIA
Integron integrase IntI4
Position: -52
Score: 5.2
Sequence: GCCTGTACAAAAATCCAGTA
Locus tag: VS_0158
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
VS_0158
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -115
Score: 4.9
Sequence: CCCTGTTTATTTATCCACTA
Locus tag: VS_0522
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VS_0522
mutH
DNA mismatch repair endonuclease MutH
Position: -41
Score: 5.9
Sequence: TACTGTTTATAAATACAGTT
Locus tag: VS_0702
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VS_0702
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -68
Score: 5.7
Sequence: AACTGGACATTTATCCAGTA
Locus tag: VS_0097
Name: rmuC
Funciton: DNA recombination protein RmuC
VS_0097
rmuC
DNA recombination protein RmuC
Position: -67
Score: 5.6
Sequence: AACTGGATAAGTATCCAGTT
Locus tag: VS_1107
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VS_1108
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VS_1107
ruvA
Holliday junction DNA helicase RuvA
VS_1108
ruvB
Holliday junction DNA helicase RuvB
Position: -84
Score: 5.7
Sequence: TACTGTTTTTTTATCCAGTA
Locus tag: VS_0320
Name: uvrA
Funciton: Excinuclease ABC subunit A
VS_0320
uvrA
Excinuclease ABC subunit A
Position: -33
Score: 5.2
Sequence: TTATGTATAAATACCCAGTA
Locus tag: VS_3084
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VS_3084
uvrD
ATP-dependent DNA helicase II
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