Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio fischeri ES114

Properties
Regulator type: Transcription factor
TF locus tag: VF_2442
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 17
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -29
Score: 5.3
Sequence: AACTGTCTATTCATACAGGT
Locus tag: VF_1641
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VF_1641
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -62
Score: 5.7
Sequence: AACTGGACATTTATCCAGTA
Locus tag: VF_0044
Name: rmuC
Funciton: DNA recombination protein RmuC
VF_0044
rmuC
DNA recombination protein RmuC
Position: -69
Score: 5.7
Sequence: CACTGTACAAATAGACAGTA
Locus tag: VF_0535
Name: recA
Funciton: Recombinase A
VF_0535
recA
Recombinase A
Position: -76
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -54
Score: 5.3
Sequence: TACTGTGTCTATATACAGTG
Locus tag: VF_1998
Name: recN
Funciton: DNA repair protein RecN
VF_1998
recN
DNA repair protein RecN
Position: -140
Score: 4.9
Sequence: CACTGTATATGGATCCAGAA
Locus tag: VF_0455
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VF_0455
mutH
DNA mismatch repair endonuclease MutH
Position: -43
Score: 5.4
Sequence: TACTGTATAAATACACACTG
Locus tag: VF_1493
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VF_1493
VC1191
Superfamily II DNA and RNA helicase
Position: -51
Score: 5
Sequence: TACTGTAATTCTAACCAGTG
Locus tag: VF_0448
Name: xerD
Funciton: Site-specific recombinase XerD
Locus tag: VF_0449
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: VF_0450
Name: recJ
Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
VF_0448
xerD
Site-specific recombinase XerD
VF_0449
dsbC
Thiol:disulfide interchange protein
VF_0450
recJ
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Position: -27
Score: 5.2
Sequence: CGCTGTACTTATATACAGTG
Locus tag: VF_1269
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
VF_1269
umuD
DNA polymerase V, subunit UmuD
Position: -27
Score: 5.6
Sequence: AACTGTGTTTTTATACAGTT
Locus tag: VF_0734
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
VF_0734
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -45
Score: 5.1
Sequence: AGCTGTATATACTCACAGTG
Position: -25
Score: 5.7
Sequence: AACTGTATAAACAGACAGGT
Locus tag: VF_2442
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VF_2442
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -66
Score: 5.8
Sequence: TACTGGATATCTATCCAGTT
Locus tag: VF_0951
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VF_0952
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VF_0951
ruvA
Holliday junction DNA helicase RuvA
VF_0952
ruvB
Holliday junction DNA helicase RuvB
Position: -90
Score: 5.5
Sequence: CACTGTTTTTTTATCCAGTA
Locus tag: VF_0341
Name: uvrA
Funciton: Excinuclease ABC subunit A
VF_0341
uvrA
Excinuclease ABC subunit A
Position: -27
Score: 5.2
Sequence: ACATGTATAAATAACCAGTG
Locus tag: VF_0068
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VF_0068
uvrD
ATP-dependent DNA helicase II
Position: -41
Score: 5.5
Sequence: TACTGTATAAAACACCAGTT
Locus tag: VF_0577
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VF_0577
yebG
SOS regulon DNA damage-inducible protein
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