Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_00268
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 27
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -45
Score: 5.4
Sequence: TACTGGATATACTCACAGTT
Position: -25
Score: 5.6
Sequence: AACTGTATAAAAAGACAGGT
Locus tag: VIBHAR_00268
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
VIBHAR_00268
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -83
Score: 5
Sequence: AGCTGTGTAAATAATCAGTA
Locus tag: VIBHAR_02827
Name: recX
Funciton: Regulatory protein RecX
VIBHAR_02827
recX
Regulatory protein RecX
Position: -83
Score: 5
Sequence: AGCTGTGTAAATAATCAGTA
Locus tag: VIBHAR_06801
Name: recX
Funciton: Regulatory protein RecX
VIBHAR_06801
recX
Regulatory protein RecX
Position: -89
Score: 5.4
Sequence: CACTGTATGAATCAACAGTA
Locus tag: VIBHAR_03513
Name: recA
Funciton: Recombinase A
Locus tag: VIBHAR_03512
Name: recX
Funciton: Regulatory protein RecX
VIBHAR_03513
recA
Recombinase A
VIBHAR_03512
recX
Regulatory protein RecX
Position: -84
Score: 5.1
Sequence: TACTGTTTACCTGTACAGTT
Locus tag: VIBHAR_03041
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
VIBHAR_03041
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -68
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -46
Score: 5.5
Sequence: TACTGTTTTCTTATACAGTA
Locus tag: VIBHAR_01130
Name: recN
Funciton: DNA repair protein RecN
VIBHAR_01130
recN
DNA repair protein RecN
Position: -105
Score: 5.6
Sequence: TACTGTATACACATACAGCA
Locus tag: VIBHAR_02055
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VIBHAR_02055
VC1191
Superfamily II DNA and RNA helicase
Position: -46
Score: 4.8
Sequence: AGGTGTATATATATACAGCC
Locus tag: VIBHAR_02961
Name: uvrB
Funciton: Excinuclease ABC subunit B
VIBHAR_02961
uvrB
Excinuclease ABC subunit B
Position: -32
Score: 5.3
Sequence: TACTGTAAATATAAACAGAT
Locus tag: VIBHAR_00956
Name: xerD
Funciton: Site-specific recombinase XerD
Locus tag: VIBHAR_00957
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: VIBHAR_00958
Name: recJ
Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
VIBHAR_00956
xerD
Site-specific recombinase XerD
VIBHAR_00957
dsbC
Thiol:disulfide interchange protein
VIBHAR_00958
recJ
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
Position: -30
Score: 5.7
Sequence: AACTGTATAAACAACCAGTC
Locus tag: VIBHAR_02003
Name: intIA
Funciton: Integron integrase IntI4
VIBHAR_02003
intIA
Integron integrase IntI4
Position: -29
Score: 5.6
Sequence: TACTGTAAATATATACAGGT
Locus tag: VIBHAR_02866
Name: imuA
Funciton: Predicted RecA/RadA recombinase
Locus tag: VIBHAR_02867
Name: imuB
Funciton: DNA polymerase-like protein PA0670
Locus tag: VIBHAR_02868
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
VIBHAR_02866
imuA
Predicted RecA/RadA recombinase
VIBHAR_02867
imuB
DNA polymerase-like protein PA0670
VIBHAR_02868
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -39
Score: 6
Sequence: TACTGTATATGTATACAGTA
Locus tag: VIBHAR_02527
Name: VC1368
Funciton: Conserved hypothetical protein
VIBHAR_02527
VC1368
Conserved hypothetical protein
Position: -26
Score: 6.3
Sequence: TACTGTATATATAAACAGTA
Locus tag: VIBHAR_p08270
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: VIBHAR_p08269
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
VIBHAR_p08270
umuD
DNA polymerase V, subunit UmuD
VIBHAR_p08269
umuC
DNA polymerase V, subunit UmuC
Position: -65
Score: 5
Sequence: TCCTGTACAAAAACACAGCT
Locus tag: VIBHAR_00625
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
VIBHAR_00625
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -162
Score: 4.6
Sequence: CCCTGTTTATTCATCCAGCC
Locus tag: VIBHAR_00966
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
VIBHAR_00966
mutH
DNA mismatch repair endonuclease MutH
Position: -67
Score: 5.5
Sequence: AACTGGACATTTATCCAGTG
Locus tag: VIBHAR_00561
Name: rmuC
Funciton: DNA recombination protein RmuC
VIBHAR_00561
rmuC
DNA recombination protein RmuC
Position: -6
Score: 5.1
Sequence: GACTGGATGTCTATCCAGTT
Locus tag: VIBHAR_01600
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VIBHAR_01601
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
VIBHAR_01600
ruvA
Holliday junction DNA helicase RuvA
VIBHAR_01601
ruvB
Holliday junction DNA helicase RuvB
Position: -86
Score: 5.3
Sequence: TACTGTTTTTTTGTCCAGTA
Locus tag: VIBHAR_03708
Name: uvrA
Funciton: Excinuclease ABC subunit A
VIBHAR_03708
uvrA
Excinuclease ABC subunit A
Position: -29
Score: 5.4
Sequence: TTATGTATAAATAACCAGTA
Locus tag: VIBHAR_00351
Name: uvrD
Funciton: ATP-dependent DNA helicase II
VIBHAR_00351
uvrD
ATP-dependent DNA helicase II
Position: -53
Score: 5.8
Sequence: AACTGTATAAAAAGCCAGTA
Locus tag: VIBHAR_03306
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
VIBHAR_03306
yebG
SOS regulon DNA damage-inducible protein
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