Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Vibrio cholerae O1 biovar eltor str. N16961

Properties
Regulator type: Transcription factor
TF locus tag: VC0092
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 21
- Operons 17
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -45
Score: 5
Sequence: CACTGGATATACTCACAGTC
Position: -25
Score: 5.6
Sequence: AACTGTATAAAAAGACAGGT
Locus tag: VC0092
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: 69
Score: 5.4
Sequence: CACTGTACAAATCAACAGTA
Locus tag: VC0543
Name: recA
Funciton: Recombinase A
Locus tag: VC0544
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -66
Score: 6
Sequence: TACTGTATAAAGAAACAGTA
Position: -44
Score: 6
Sequence: AACTGTTTAAACATACAGTA
Position: -26
Score: 4.7
Sequence: TATTGGTTAATCATACAGGT
Locus tag: VC0852
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -30
Score: 5.8
Sequence: TACTGTTTATGTATACAGTA
Locus tag: VC2287
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -84
Score: 5.5
Sequence: TACTGGTTAAATTTACAGTT
Locus tag: VC2043
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -39
Score: 5.8
Sequence: TACTGTATTTACATACAGCA
Locus tag: VC1191
Name: VC1191
Funciton: Superfamily II DNA and RNA helicase
VC1191
Superfamily II DNA and RNA helicase

Position: -40
Score: 5.9
Sequence: TACTGTACAAATAACCAGTT
Locus tag: VCA0291
Name: intIA
Funciton: Integron integrase IntI4
intIA
Integron integrase IntI4

Position: -60
Score: 5.8
Sequence: AACTGTATTAAAAAACAGTA
Position: -10
Score: 4.7
Sequence: TGCTGTAATTATGTACAGTG
Locus tag: VC1368
Name: VC1368
Funciton: Conserved hypothetical protein
VC1368
Conserved hypothetical protein

Position: -65
Score: 5
Sequence: TCCTGTACAAAAACACAGCT
Locus tag: VC2711
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)

Position: -174
Score: 4.1
Sequence: TACTGTTTATTGATCCATAC
Locus tag: VC0668
Name: mutH
Funciton: DNA mismatch repair endonuclease MutH
mutH
DNA mismatch repair endonuclease MutH

Position: -56
Score: 5.5
Sequence: AACTGGACATTTATCCAGTG
Locus tag: VC0082
Name: rmuC
Funciton: DNA recombination protein RmuC
rmuC
DNA recombination protein RmuC

Position: -71
Score: 5.2
Sequence: TACTGGCTATCCATCCAGTT
Locus tag: VC1846
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: VC1845
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -85
Score: 5.7
Sequence: AACTGTTTTTTTATCCAGTA
Locus tag: VC0394
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -28
Score: 5.1
Sequence: TTATGTATAAATAACCAGTG
Locus tag: VC0190
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -49
Score: 5.9
Sequence: AACTGTATAAACAGCCAGTT
Locus tag: VC2326
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
yebG
SOS regulon DNA damage-inducible protein

Position: -89
Score: 4
Sequence: GGCTGTTTTTTTGTACATTA
Locus tag: VC1463
Name: rstA
Funciton: RstA phage-related replication protein
Locus tag: VC1462
Name: rstB
Funciton: RstB phage-related integrase
rstA
RstA phage-related replication protein
rstB
RstB phage-related integrase

Position: -89
Score: 4
Sequence: GGCTGTTTTTTTGTACATTA
Locus tag: VC1454
Name: null
Funciton: RstA phage-related replication protein
Locus tag: VC1453
Name: null
Funciton: RstB phage-related integrase
RstA phage-related replication protein
RstB phage-related integrase
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