Regulon of PhrR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_17992 |
| Regulator family: | MerR |
| Regulation mode: | repressor |
| Biological process: | Light-dependent DNA repair |
| Effector: | Heat shock; Adenosylcobalamin |
| Regulog: | PhrR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - PhrR
- By TF family - MerR
- By effector - Heat shock
- By effector - Adenosylcobalamin
- By pathway - Light-dependent DNA repair
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -78
Score: 5.6 Sequence: TGTACAAGATAGAATTTTGTATC
Locus tag: VSAK1_17997
Name: COG3272 Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: VSAK1_17992
Name: phrR Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: VSAK1_17987
Name: phr Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: VSAK1_17982
Name: ykuD Funciton: L,D-transpeptidase catalytic domain |
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COG3272
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COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
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phrR
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Transcriptional regulator, MerR family, associated with photolyase
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phr
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Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
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ykuD
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L,D-transpeptidase catalytic domain
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Position: -95
Score: 4.6 Sequence: TATACAAAAAGTTGTACTTTCCA
Locus tag: VSAK1_00115
Name: PF07366 Funciton: Protein of unknown function DUF1486
Locus tag: VSAK1_00120
Name: PF00106 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: VSAK1_00125
Name: PF01593 Funciton: Flavin containing amine oxidoreductase
Locus tag: VSAK1_00130
Name: PF07103 Funciton: Protein of unknown function DUF1365
Locus tag: VSAK1_00135
Name: PF02353 Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: VSAK1_00140
Name: PF11086 Funciton: Protein of unknown function DUF2878
Locus tag: VSAK1_00145
Name: FIG026291 Funciton: FIG026291: Hypothetical periplasmic protein
Locus tag: VSAK1_00150
Name: FIG002577 Funciton: FIG002577: Putative lipoprotein precursor |
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PF07366
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Protein of unknown function DUF1486
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PF00106
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Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
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PF01593
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Flavin containing amine oxidoreductase
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PF07103
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Protein of unknown function DUF1365
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PF02353
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S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
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PF11086
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Protein of unknown function DUF2878
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FIG026291
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FIG026291: Hypothetical periplasmic protein
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FIG002577
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FIG002577: Putative lipoprotein precursor
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |