Regulon of HexR in Vibrio shilonii AK1
| Regulator type: | Transcription factor |
| TF locus tag: | VSAK1_06320 |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Regulog: | HexR - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 12 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HexR
- By taxonomy - Vibrionales
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -140
Score: 5.1 Sequence: TGTAATAAAATTTCA
Position: 5
Score: 5.6 Sequence: TGTAGTTAAATTACA
Locus tag: VSAK1_09453
Name: ppc Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
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ppc
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Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
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Position: -265
Score: 4.9 Sequence: TGTAGGTAAATTACA
Position: -84
Score: 4.9 Sequence: TGTAATTGATTTACA
Locus tag: VSAK1_05765
Name: nirB Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VSAK1_05770
Name: nirD Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
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nirB
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Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
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nirD
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Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
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Position: -63
Score: 5.2 Sequence: TGTAGTAAAATTACG
Locus tag: VSAK1_12617
Name: gpmM Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
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gpmM
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2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
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Position: -157
Score: 5.1 Sequence: TGTAATCAAATTACA
Locus tag: VSAK1_00485
Name: ygaW Funciton: Putative inner membrane protein |
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ygaW
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Putative inner membrane protein
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Position: -483
Score: 4.7 Sequence: TGAAACTAAATTACA
Locus tag: VSAK1_13982
Name: gltB Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VSAK1_13977
Name: gltD Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
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gltB
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Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
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gltD
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Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
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Position: -237
Score: 4.5 Sequence: TGTAATCTTATTTCA
Position: -57
Score: 5.3 Sequence: TGTAATTTAACTACC
Locus tag: VSAK1_04037
Name: glgC Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VSAK1_04042
Name: glgA Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
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glgC
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Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
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glgA
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Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
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Position: -390
Score: 5.6 Sequence: TGTAATAAAATTACA
Position: -193
Score: 4.3 Sequence: TGTAATTTATCAACG
Locus tag: VSAK1_20779
Name: mtlA Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VSAK1_20784
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VSAK1_20789
Name: mtlR Funciton: Mannitol operon repressor |
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mtlA
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PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
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mtlD
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Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
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mtlR
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Mannitol operon repressor
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Position: -85
Score: 4.4 Sequence: TGTTTTTTTATTACA
Locus tag: VSAK1_14807
Name: pntA Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VSAK1_14802
Name: pntB Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
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pntA
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NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
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pntB
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NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
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Position: -183
Score: 4.4 Sequence: TGAAAAATTATTACG
Locus tag: VSAK1_09208
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -44
Score: 4.7 Sequence: TGTAATAAAATGACG
Locus tag: VSAK1_00270
Name: pflA Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
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pflA
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Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
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Position: -112
Score: 5.3 Sequence: TGAAATTAAATTACA
Locus tag: VSAK1_18594
Name: glgX Funciton: Glycogen debranching enzyme (EC 3.2.1.-) |
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glgX
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Glycogen debranching enzyme (EC 3.2.1.-)
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Position: -321
Score: 4.9 Sequence: TGTAATTATGTTACG
Position: -170
Score: 4.1 Sequence: TGAAACTAAATTTCG
Locus tag: VSAK1_26880
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
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ptsG
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PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |