Regulog HexR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | RpiR |
| Regulation mode: | repressor (activator) |
| Biological process: | Central carbohydrate metabolism |
| Effector: | 2-keto-3-deoxy-6-phosphogluconate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - HexR
- By taxonomy - Vibrionales
- By TF family - RpiR
- By effector - 2-keto-3-deoxy-6-phosphogluconate
- By pathway - Central carbohydrate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 19 | 15 |
| Vibrio vulnificus CMCP6 | 23 | 16 |
| Vibrio harveyi ATCC BAA-1116 | 22 | 16 |
| Vibrio parahaemolyticus RIMD 2210633 | 22 | 16 |
| Vibrio shilonii AK1 | 18 | 12 |
| Vibrio splendidus LGP32 | 15 | 12 |
| Vibrio fischeri ES114 | 21 | 14 |
| Vibrio salmonicida LFI1238 | 22 | 15 |
| Vibrio angustum S14 | 17 | 13 |
| Photobacterium profundum SS9 | 26 | 20 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| aceB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -256 score = 5.50596 sequence = TGTAATTAAATTACG Gene: VC0734: Malate synthase (EC 2.3.3.9) |
*
Vibrio vulnificus CMCP6 Site: position = -310 score = 5.50596 sequence = TGTAATTAAATTACG Site: position = -187 score = 4.38592 sequence = TGTAAGTTAATTAAA Gene: VV1_0450: Malate synthase (EC 2.3.3.9) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -305 score = 5.50596 sequence = TGTAATTTAATTACG Gene: VIBHAR_01041: Malate synthase (EC 2.3.3.9) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -305 score = 5.50596 sequence = TGTAATTAAATTACG Gene: VP0583: Malate synthase (EC 2.3.3.9) |
Gene: VSAK1_24895: Malate synthase (EC 2.3.3.9) |
|
*
Vibrio fischeri ES114 Site: position = -295 score = 5.50596 sequence = TGTAATTTAATTACG Gene: VF_1973: Malate synthase (EC 2.3.3.9) |
*
Vibrio salmonicida LFI1238 Site: position = -295 score = 5.3748 sequence = TGTAATTTTATTACG Gene: VSAL_I2439: Malate synthase (EC 2.3.3.9) |
*
Vibrio angustum S14 Site: position = -297 score = 5.3748 sequence = TGTAATAAAATTACG Gene: VAS14_06773: Malate synthase (EC 2.3.3.9) |
*2
Photobacterium profundum SS9 Site: position = -303 score = 5.20236 sequence = GGTAATTAAATTACG Gene: PBPRA0737: Malate synthase (EC 2.3.3.9) Gene: PBPRA2276: Malate synthase (EC 2.3.3.9) |
Malate synthase (EC 2.3.3.9) |
| aceA |
Gene: VC0736: Isocitrate lyase (EC 4.1.3.1) |
Gene: VV1_0449: Isocitrate lyase (EC 4.1.3.1) |
Gene: VIBHAR_01042: Isocitrate lyase (EC 4.1.3.1) |
Gene: VP0584: Isocitrate lyase (EC 4.1.3.1) |
|
|
Gene: VF_1972: Isocitrate lyase (EC 4.1.3.1) |
Gene: VSAL_I2438: Isocitrate lyase (EC 4.1.3.1) |
Gene: VAS14_06768: Isocitrate lyase (EC 4.1.3.1) |
Gene: PBPRA0738: Isocitrate lyase (EC 4.1.3.1) |
Isocitrate lyase (EC 4.1.3.1) |
| CRON 2. | |||||||||||
| gpmM |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -60 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VC0336: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio vulnificus CMCP6 Site: position = -90 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VV1_1281: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -91 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VIBHAR_00121: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -91 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VP2829: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio shilonii AK1 Site: position = -63 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VSAK1_12617: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio splendidus LGP32 Site: position = -64 score = 5.22925 sequence = TGTAGTAAAATTACG Gene: VS_0235: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio fischeri ES114 Site: position = -63 score = 5.42659 sequence = TGTAGTAAAATTACA Gene: VF_0202: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio salmonicida LFI1238 Site: position = -45 score = 5.42659 sequence = TGTAGTAAAATTACA Gene: VSAL_I3050: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Vibrio angustum S14 Site: position = -108 score = 5.42659 sequence = TGTAGTAAAATTACA Gene: VAS14_21577: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
*
Photobacterium profundum SS9 Site: position = -93 score = 5.42659 sequence = TGTAGTAAAATTACA Gene: PBPRA0224: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) |
| CRON 3. | |||||||||||
| ppc |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -28 score = 4.72833 sequence = TGTAATTTTTTTTCA Site: position = -172 score = 4.07933 sequence = TGTAAGAAATTTTCA Gene: VC2646: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio vulnificus CMCP6 Site: position = -28 score = 4.98415 sequence = TGTAATTTTTTTACG Site: position = -175 score = 4.72833 sequence = TGTAATAAATTTTCA Gene: VV1_1369: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -142 score = 4.85948 sequence = TGTAATTAATTTTCA Site: position = 5 score = 4.8386 sequence = TGTAGTTTTTTTACG Gene: VIBHAR_00045: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -174 score = 4.85948 sequence = TGTAATTAATTTTCA Site: position = -28 score = 4.8386 sequence = TGTAGTTTTTTTACG Gene: VP2761: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio shilonii AK1 Site: position = -140 score = 5.11898 sequence = TGTAATAAAATTTCA Site: position = 5 score = 5.55775 sequence = TGTAGTTAAATTACA Gene: VSAK1_09453: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio splendidus LGP32 Site: position = -28 score = 4.98415 sequence = TGTAATTTTTTTACG Site: position = -173 score = 5.25013 sequence = TGTAATTAAATTTCA Gene: VS_2890: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio fischeri ES114 Site: position = -177 score = 4.72833 sequence = TGAAATAAATTTACA Site: position = -31 score = 5.05415 sequence = TGTAACAAAATTACA Gene: VF_2308: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio salmonicida LFI1238 Site: position = -30 score = 5.57214 sequence = TGTAATAAAATTACA Site: position = -175 score = 4.72833 sequence = TGAAATAAATTTACA Gene: VSAL_I2754: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Vibrio angustum S14 Site: position = -163 score = 4.60099 sequence = TGAAACAAAATTACA Site: position = -28 score = 4.98797 sequence = TGTAACTAAATTACG Gene: VAS14_21427: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
*
Photobacterium profundum SS9 Site: position = -28 score = 4.85681 sequence = TGTAACAAAATTACG Site: position = -163 score = 3.95049 sequence = CGAAATAAAGTTTCA Gene: PBPRA0265: Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
Phosphoenolpyruvate carboxylase (EC 4.1.1.31) |
| CRON 4. | |||||||||||
| focA |
Gene: VC1695: Formate efflux transporter (TC 2.A.44 family) |
Gene: VV1_2900: Formate efflux transporter (TC 2.A.44 family) |
Gene: VIBHAR_01852: Formate efflux transporter (TC 2.A.44 family) |
Gene: VP1157: Formate efflux transporter (TC 2.A.44 family) |
Gene: VSAK1_04347: Formate efflux transporter (TC 2.A.44 family) |
Gene: VS_2008: Formate efflux transporter (TC 2.A.44 family) |
Gene: VF_A0813: Formate efflux transporter (TC 2.A.44 family) |
*
Vibrio salmonicida LFI1238 Site: position = -357 score = 5.25013 sequence = TGAAATTAAATTACA Site: position = -306 score = 4.4506 sequence = TGTCATTTTATTTCA Gene: VSAL_I1956: Formate efflux transporter (TC 2.A.44 family) |
*
Vibrio angustum S14 Site: position = -115 score = 4.4506 sequence = TGTTATAAAATTTCA Site: position = -219 score = 5.05415 sequence = TGTAACAAAATTACA Gene: VAS14_06508: Formate efflux transporter (TC 2.A.44 family) |
Gene: PBPRA2807: Formate efflux transporter (TC 2.A.44 family) |
Formate efflux transporter (TC 2.A.44 family) |
| pflB |
|
Gene: VV1_2098: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VIBHAR_01546: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VP0994: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VSAK1_00285: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VS_1052: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VF_1590: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VSAL_I1955: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: VAS14_06513: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: PBPRA2750: Pyruvate formate-lyase (EC 2.3.1.54) |
Pyruvate formate-lyase (EC 2.3.1.54) |
| CRON 5. | |||||||||||
| dld |
|
|
Gene: VIBHAR_05675: D-Lactate dehydrogenase (EC 1.1.2.5) |
Gene: VPA1005: D-Lactate dehydrogenase (EC 1.1.2.5) |
|
|
|
|
|
*
Photobacterium profundum SS9 Site: position = -389 score = 4.83758 sequence = CGTTATTTAATTACA Gene: PBPRA2224: D-Lactate dehydrogenase (EC 1.1.2.5) |
D-Lactate dehydrogenase (EC 1.1.2.5) |
| CRON 6. | |||||||||||
| gapA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -55 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VC2000: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio vulnificus CMCP6 Site: position = -55 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VV1_3140: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -55 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VIBHAR_03049: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -55 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VP2157: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Gene: VSAK1_10028: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
Gene: VS_0932: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio fischeri ES114 Site: position = -62 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VF_0913: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio salmonicida LFI1238 Site: position = -63 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VSAL_I1849: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Vibrio angustum S14 Site: position = -55 score = 5.12299 sequence = TGTAATTTTACTACC Gene: VAS14_06013: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
*
Photobacterium profundum SS9 Site: position = -55 score = 4.45462 sequence = TGTAATTTTACCACC Gene: PBPRA2602: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) |
| CRON 7. | |||||||||||
| mtlA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -422 score = 5.03976 sequence = TGTAGCTTAATTACA Gene: VCA1045: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
*
Vibrio vulnificus CMCP6 Site: position = -260 score = 4.38592 sequence = TGTTATTAACTTACA Gene: VV1_0638: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -212 score = 4.51693 sequence = TGTTATTAAGTTACA Gene: VIBHAR_00834: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -211 score = 4.51693 sequence = TGTTATTAAGTTACA Gene: VP0370: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
*
Vibrio shilonii AK1 Site: position = -390 score = 5.57214 sequence = TGTAATAAAATTACA Site: position = -193 score = 4.30138 sequence = TGTAATTTATCAACG Gene: VSAK1_20779: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
|
|
*
Vibrio salmonicida LFI1238 Site: position = -422 score = 4.92164 sequence = CGTAATAAAATTTCA Site: position = -207 score = 4.58278 sequence = TGTAGTAAATTTTCA Gene: VSAL_I2813: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
|
*
Photobacterium profundum SS9 Site: position = -210 score = 4.64581 sequence = TGTAATTCACTTACA Gene: PBPRB0363: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69) |
| mtlD |
Gene: VCA1046: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
Gene: VV1_0639: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
Gene: VIBHAR_00833: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
Gene: VP0369: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
Gene: VSAK1_20784: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
|
|
Gene: VSAL_I2814: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
|
Gene: PBPRB0362: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17) |
| mtlR |
Gene: VCA1047: Mannitol operon repressor |
Gene: VV1_0640: Mannitol operon repressor |
Gene: VIBHAR_00832: Mannitol operon repressor |
Gene: VP0368: Mannitol operon repressor |
Gene: VSAK1_20789: Mannitol operon repressor |
|
|
Gene: VSAL_I2815: Mannitol operon repressor |
|
Gene: PBPRB0361: Mannitol operon repressor |
Mannitol operon repressor |
| CRON 8. | |||||||||||
| nirB |
|
*
Vibrio vulnificus CMCP6 Site: position = -82 score = 4.70682 sequence = CGTAATTGATTTACA Site: position = -231 score = 4.59717 sequence = TGAAAAAATATTACA Gene: VV20370: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
|
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -84 score = 4.90416 sequence = TGTAATTGATTTACA Gene: VPA0987: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
*
Vibrio shilonii AK1 Site: position = -84 score = 4.90416 sequence = TGTAATTGATTTACA Site: position = -265 score = 4.90875 sequence = TGTAGGTAAATTACA Gene: VSAK1_05765: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
*
Vibrio splendidus LGP32 Site: position = -85 score = 4.70682 sequence = CGTAATTGATTTACA Gene: VS_II0668: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
*
Vibrio fischeri ES114 Site: position = -184 score = 5.03594 sequence = TGTAAAAAAACTACA Gene: VF_0776: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
*
Vibrio salmonicida LFI1238 Site: position = -77 score = 4.56127 sequence = CGTAATTGATCTACA Site: position = -184 score = 5.22925 sequence = TGTAATAAAACTACG Gene: VSAL_I0798: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
|
*
Photobacterium profundum SS9 Site: position = -174 score = 5.18531 sequence = TGTAATTTAGTTACA Gene: PBPRA1428: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) |
| nirD |
|
Gene: VV20369: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
|
Gene: VPA0986: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
Gene: VSAK1_05770: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
Gene: VS_II0669: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
Gene: VF_0775: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
Gene: VSAL_I0797: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
|
Gene: PBPRA1427: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) |
| CRON 9. | |||||||||||
| ygaW |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -246 score = 5.26854 sequence = TGTAATAAAATTACC Gene: VC1828: Putative inner membrane protein |
*
Vibrio vulnificus CMCP6 Site: position = -154 score = 4.34068 sequence = GGTTATTAATTTACA Site: position = -237 score = 5.36041 sequence = TGTAGTTTAATTACG Gene: VV1_2181: Putative inner membrane protein |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -150 score = 4.34068 sequence = GGTTATTAATTTACA Site: position = -244 score = 4.5128 sequence = AGTAAATAAATTACG Gene: VIBHAR_01621: Putative inner membrane protein |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -150 score = 4.34068 sequence = GGTTATTAATTTACA Gene: VP1070: Putative inner membrane protein |
*
Vibrio shilonii AK1 Site: position = -157 score = 5.10079 sequence = TGTAATCAAATTACA Gene: VSAK1_00485: Putative inner membrane protein |
*
Vibrio splendidus LGP32 Site: position = -247 score = 4.69203 sequence = TGTTGTTTAATTACG Gene: VS_1130: Putative inner membrane protein |
*
Vibrio fischeri ES114 Site: position = -164 score = 5.03594 sequence = TGTAAATTTACTACA Site: position = -226 score = 5.26854 sequence = TGTAATTTTATTACC Gene: VF_0967: Putative inner membrane protein |
*
Vibrio salmonicida LFI1238 Site: position = -275 score = 5.0528 sequence = TGAAATTAAATTACG Site: position = -213 score = 5.03594 sequence = TGTAAATTTACTACA Gene: VSAL_I1909: Putative inner membrane protein |
Gene: VAS14_18179: Putative inner membrane protein |
Gene: PBPRA2535: Putative inner membrane protein |
Putative inner membrane protein |
| CRON 10. | |||||||||||
| pgi |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -138 score = 4.85948 sequence = TGAAAATTAATTACA Gene: VC0374: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Vibrio vulnificus CMCP6 Site: position = -141 score = 4.72833 sequence = TGAAAAAAAATTACA Gene: VV1_1396: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -138 score = 4.72833 sequence = TGAAAAAAAATTACA Gene: VIBHAR_00012: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -138 score = 4.72833 sequence = TGAAAAAAAATTACA Gene: VP2731: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Vibrio shilonii AK1 Site: position = -183 score = 4.39983 sequence = TGAAAAATTATTACG Gene: VSAK1_09208: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Vibrio splendidus LGP32 Site: position = -143 score = 4.72833 sequence = TGAAAAAAAATTACA Gene: VS_0288: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: VF_0304: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: VSAL_I0385: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Gene: VAS14_18734: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
*
Photobacterium profundum SS9 Site: position = -135 score = 4.15571 sequence = AGTTGTAAAATTACA Gene: PBPRA3328: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
Glucose-6-phosphate isomerase (EC 5.3.1.9) |
| CRON 11. | |||||||||||
| pntA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -85 score = 5.09747 sequence = CGTAATTGAATTACA Gene: VCA0563: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio vulnificus CMCP6 Site: position = -86 score = 5.08625 sequence = TGTATTTTAACTACA Gene: VV20317: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -290 score = 4.38544 sequence = CGTAGTTATTTTTCA Site: position = -225 score = 4.49814 sequence = AGTATTTTTATTACA Gene: VIBHAR_05733: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -227 score = 4.62929 sequence = AGTATTTAAATTACA Gene: VPA0922: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio shilonii AK1 Site: position = -85 score = 4.43227 sequence = TGTTTTTTTATTACA Gene: VSAK1_14807: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
Gene: VS_II0732: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio fischeri ES114 Site: position = -87 score = 4.90376 sequence = TGTCATTTTATTACA Gene: VF_A0586: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio salmonicida LFI1238 Site: position = -87 score = 4.90376 sequence = TGTCATTTTATTACA Gene: VSAL_II0623: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
*
Vibrio angustum S14 Site: position = -85 score = 4.95509 sequence = TGTATTTTTACTACA Gene: VAS14_11949: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
Gene: PBPRB0902: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) |
| pntB |
Gene: VCA0564: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
2
Vibrio vulnificus CMCP6 Gene: VV20316: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) Gene: VV20315: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VIBHAR_05734: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VPA0921: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VSAK1_14802: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VS_II0733: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VF_A0585: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VSAL_II0624: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: VAS14_11954: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
Gene: PBPRB0903: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) |
| CRON 12. | |||||||||||
| pflA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -42 score = 4.70642 sequence = TGTAATAAAATAACG Gene: VC1869: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
*
Vibrio vulnificus CMCP6 Site: position = -46 score = 4.90376 sequence = TGTAATAAAATAACA Gene: VV1_2095: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -138 score = 4.90376 sequence = TGTAATAAAATAACA Gene: VIBHAR_01544: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -45 score = 4.90376 sequence = TGTAATAAAATAACA Gene: VP0992: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
*
Vibrio shilonii AK1 Site: position = -44 score = 4.70642 sequence = TGTAATAAAATGACG Gene: VSAK1_00270: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Gene: VS_1050: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
|
Gene: VSAL_I1953: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
*
Vibrio angustum S14 Site: position = -46 score = 4.90376 sequence = TGTAATAAAATAACA Gene: VAS14_06518: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
|
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
| CRON 13. | |||||||||||
| eda |
|
Gene: VV20558: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
Gene: VIBHAR_06261: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
Gene: VPA1185: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
Gene: VSAK1_14652: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
|
|
|
Gene: VAS14_10584: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
*
Photobacterium profundum SS9 Site: position = -137 score = 5.11898 sequence = TGTAATTTTATTTCA Gene: PBPRB1262: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha |
| CRON 14. | |||||||||||
| gltB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -487 score = 5.70329 sequence = TGTAATTTAATTACA Gene: VC2373: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio vulnificus CMCP6 Site: position = -504 score = 5.31264 sequence = TGTAAATTAATTACA Gene: VV1_0553: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -509 score = 5.31264 sequence = TGTAAATAAATTACA Gene: VIBHAR_00928: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -308 score = 5.18531 sequence = TGTAACTAAATTACA Gene: VP0484: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio shilonii AK1 Site: position = -483 score = 4.73215 sequence = TGAAACTAAATTACA Gene: VSAK1_13982: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio splendidus LGP32 Site: position = -484 score = 4.72833 sequence = TGAAAAAAAATTACA Gene: VS_0474: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio fischeri ES114 Site: position = -299 score = 4.2596 sequence = TGTAGGATAGTTACA Gene: VF_2124: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
Gene: VSAL_I2562: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Vibrio angustum S14 Site: position = -495 score = 4.64381 sequence = CGTAAATAAAATACA Gene: VAS14_07734: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
*
Photobacterium profundum SS9 Site: position = -295 score = 4.2596 sequence = TGTAGGATAGTTACA Gene: PBPRA0542: Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
Glutamate synthase [NADPH] large chain (EC 1.4.1.13) |
| gltD |
Gene: VC2374: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VV1_0554: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VIBHAR_00927: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VP0483: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VSAK1_13977: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VS_0473: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VF_2125: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VSAL_I2563: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: VAS14_07739: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Gene: PBPRA0541: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
Glutamate synthase [NADPH] small chain (EC 1.4.1.13) |
| CRON 15. | |||||||||||
| pykA |
Gene: VC2008: Pyruvate kinase (EC 2.7.1.40) |
Gene: VV1_2992: Pyruvate kinase (EC 2.7.1.40) |
Gene: VIBHAR_02874: Pyruvate kinase (EC 2.7.1.40) |
Gene: VP2039: Pyruvate kinase (EC 2.7.1.40) |
|
Gene: VS_1037: Pyruvate kinase (EC 2.7.1.40) |
Gene: VF_A0494: Pyruvate kinase (EC 2.7.1.40) |
Gene: VSAL_II0579: Pyruvate kinase (EC 2.7.1.40) |
Gene: VAS14_00841: Pyruvate kinase (EC 2.7.1.40) |
*
Photobacterium profundum SS9 Site: position = -75 score = 4.84227 sequence = TGTAGTAATATTTCA Gene: PBPRA2431: Pyruvate kinase (EC 2.7.1.40) |
Pyruvate kinase (EC 2.7.1.40) |
| CRON 16. | |||||||||||
| lctP |
Gene: VCA0983: L-lactate permease |
Gene: VV20797: L-lactate permease |
|
Gene: VPA1498: L-lactate permease |
Gene: VSAK1_22154: L-lactate permease |
Gene: VS_II1397: L-lactate permease |
|
|
*
Vibrio angustum S14 Site: position = -406 score = 4.95524 sequence = TGTAGTTTAATTACT Gene: VAS14_01376: L-lactate permease |
*3
Photobacterium profundum SS9 Site: position = -428 score = 4.56087 sequence = CGTAATTTTACGACA Gene: PBPRA2357: L-lactate permease Site: position = -437 score = 4.09926 sequence = TGTAATATAACACCA Gene: PBPRA2223: L-lactate permease Gene: PBPRA1411: L-lactate permease |
L-lactate permease |
| CRON 17. | |||||||||||
| hexR |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -282 score = 4.06331 sequence = AGAAATAAAATTTCA Gene: VC1148: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VV1_2825: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VIBHAR_02633: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VP1236: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VSAK1_06320: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VS_1834: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Vibrio fischeri ES114 Site: position = -148 score = 4.56342 sequence = TGTTATTAAAATACA Gene: VF_0891: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Vibrio salmonicida LFI1238 Site: position = -274 score = 4.04556 sequence = TGAAAATAAACCACA Gene: VSAL_I2031: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Gene: VAS14_00846: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
*
Photobacterium profundum SS9 Site: position = -225 score = 5.10458 sequence = TGAAATTAAACTACA Site: position = -80 score = 4.37092 sequence = AGTAGTATAATTTCA Gene: PBPRA2430: Central carbohydrate metabolism transcription regulator HexR, RpiR family |
Central carbohydrate metabolism transcription regulator HexR, RpiR family |
| CRON 18. | |||||||||||
| pckA |
Gene: VC2738: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
*
Vibrio vulnificus CMCP6 Site: position = -239 score = 4.53399 sequence = CGTAATTAAATAACC Gene: VV1_0881: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: VIBHAR_00597: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: VP0129: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: VSAK1_13343: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
*
Vibrio splendidus LGP32 Site: position = -242 score = 4.40283 sequence = CGTAATAAAATCACC Gene: VS_0131: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: VF_2478: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: VSAL_I2928: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
*
Vibrio angustum S14 Site: position = -295 score = 5.11898 sequence = TGAAATATAATTACA Gene: VAS14_23029: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Gene: PBPRA3485: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
| CRON 19. | |||||||||||
| ptsH |
Gene: VC0966: Phosphocarrier protein of PTS system |
Gene: VV1_0210: Phosphocarrier protein of PTS system |
Gene: VIBHAR_01308: Phosphocarrier protein of PTS system |
Gene: VP0795: Phosphocarrier protein of PTS system |
Gene: VSAK1_11440: Phosphocarrier protein of PTS system |
Gene: VS_2290: Phosphocarrier protein of PTS system |
*
Vibrio fischeri ES114 Site: position = -206 score = 5.18149 sequence = TGTAAAATAATTACA Gene: VF_1894: Phosphocarrier protein of PTS system |
*
Vibrio salmonicida LFI1238 Site: position = -205 score = 5.18149 sequence = TGTAAAATAATTACA Gene: VSAL_I2357: Phosphocarrier protein of PTS system |
Gene: VAS14_16916: Phosphocarrier protein of PTS system |
Gene: PBPRA0863: Phosphocarrier protein of PTS system |
Phosphocarrier protein of PTS system |
| ptsI |
Gene: VC0965: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VV1_0211: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VIBHAR_01307: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VP0794: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VSAK1_11445: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VS_2291: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VF_1895: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VSAL_I2358: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: VAS14_16911: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Gene: PBPRA0862: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) |
| crr |
Gene: VC0964: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VV1_0212: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VIBHAR_01306: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VP0793: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VSAK1_08748: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VS_2292: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VF_1897: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VSAL_I2359: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: VAS14_16906: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
Gene: PBPRA0861: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
PTS system, glucose-specific IIA component (EC 2.7.1.69) |
| CRON 20. | |||||||||||
| ptsG |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -249 score = 4.45164 sequence = TGTAATTTTGTTACT Site: position = -98 score = 4.08165 sequence = TGAAACTTAATTTCG Gene: VC2013: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
*
Vibrio vulnificus CMCP6 Site: position = -321 score = 4.45164 sequence = TGTAATTTTGTTACT Gene: VV1_2999: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -322 score = 4.45164 sequence = TGTAATTTTGTTACT Site: position = -171 score = 4.08165 sequence = TGAAACTAAATTTCG Gene: VIBHAR_02900: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -322 score = 4.45164 sequence = TGTAATTTTGTTACT Site: position = -291 score = 4.64381 sequence = TGTATTTTATTTACG Gene: VP2046: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
*
Vibrio shilonii AK1 Site: position = -321 score = 4.85681 sequence = TGTAATTATGTTACG Site: position = -170 score = 4.08165 sequence = TGAAACTAAATTTCG Gene: VSAK1_26880: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
*
Vibrio splendidus LGP32 Site: position = -322 score = 4.45164 sequence = TGTAATTTTGTTACT Site: position = -172 score = 4.08165 sequence = TGAAACTAAATTTCG Gene: VS_1032: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
Gene: VF_1732: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
Gene: VSAL_I2252: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
|
*2
Photobacterium profundum SS9 Site: position = -298 score = 5.11898 sequence = TGAAATTTTATTACA Site: position = -176 score = 4.79697 sequence = TGAAATTAAATTTCA Gene: PBPRA1203: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) Gene: PBPRA1760: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
| CRON 21. | |||||||||||
| tpiA |
Gene: VC2670: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio vulnificus CMCP6 Site: position = -78 score = 4.44795 sequence = CGTAGATTTTTTACA Gene: VV1_1343: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -73 score = 4.44795 sequence = CGTAGATTTTTTACA Gene: VIBHAR_00709: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -55 score = 4.44795 sequence = CGTAGATTTTTTACA Gene: VP0239: Triosephosphate isomerase (EC 5.3.1.1) |
Gene: VSAK1_12567: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio splendidus LGP32 Site: position = -70 score = 4.1221 sequence = TGTTATATTATTTCG Gene: VS_2912: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio fischeri ES114 Site: position = -52 score = 4.18462 sequence = TGTTATATTTTTACG Gene: VF_0206: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio salmonicida LFI1238 Site: position = -52 score = 4.18462 sequence = TGTTATATTTTTACG Gene: VSAL_I0283: Triosephosphate isomerase (EC 5.3.1.1) |
*
Vibrio angustum S14 Site: position = -57 score = 4.28672 sequence = TATATTTTTACTACA Gene: VAS14_21527: Triosephosphate isomerase (EC 5.3.1.1) |
*
Photobacterium profundum SS9 Site: position = -18 score = 4.49872 sequence = TTTAGTTAATTTACA Gene: PBPRA0235: Triosephosphate isomerase (EC 5.3.1.1) |
Triosephosphate isomerase (EC 5.3.1.1) |
| CRON 22. | |||||||||||
| glgC |
Gene: VC1727: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
Gene: VV1_2131: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -251 score = 4.52636 sequence = TGTAATTTAGTTCCA Gene: VIBHAR_01575: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
Gene: VP1023: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
*
Vibrio shilonii AK1 Site: position = -237 score = 4.51647 sequence = TGTAATCTTATTTCA Site: position = -57 score = 5.25415 sequence = TGTAATTTAACTACC Gene: VSAK1_04037: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
*
Vibrio splendidus LGP32 Site: position = -366 score = 4.51693 sequence = TGTAACTTAATTAAA Gene: VS_1082: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
*
Vibrio fischeri ES114 Site: position = -84 score = 4.05628 sequence = TGTAAATAATTTATG Gene: VF_A0806: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
Gene: VSAL_II0238: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
|
*
Photobacterium profundum SS9 Site: position = -146 score = 4.64763 sequence = TGAAATGAAATTACA Site: position = -99 score = 4.30505 sequence = TGTAATTATACATCA Gene: PBPRB0405: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) |
| glgA |
Gene: VC1726: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VV1_2132: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VIBHAR_01576: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VP1024: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VSAK1_04042: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VS_1083: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VF_A0805: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Gene: VSAL_II0239: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
|
Gene: PBPRB0406: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) |
| CRON 23. | |||||||||||
| glgX |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -99 score = 5.11898 sequence = TGAAATAAAATTACA Gene: VCA1029: Glycogen debranching enzyme (EC 3.2.1.-) |
Gene: VV21226: Glycogen debranching enzyme (EC 3.2.1.-) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -35 score = 5.10079 sequence = AGTAATTTAATTACA Gene: VIBHAR_04820: Glycogen debranching enzyme (EC 3.2.1.-) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -114 score = 5.10079 sequence = AGTAATTAAATTACA Gene: VPA1645: Glycogen debranching enzyme (EC 3.2.1.-) |
*
Vibrio shilonii AK1 Site: position = -112 score = 5.25013 sequence = TGAAATTAAATTACA Gene: VSAK1_18594: Glycogen debranching enzyme (EC 3.2.1.-) |
Gene: VS_II0157: Glycogen debranching enzyme (EC 3.2.1.-) |
Gene: VF_A0801: Glycogen debranching enzyme (EC 3.2.1.-) |
*
Vibrio salmonicida LFI1238 Site: position = -147 score = 4.01218 sequence = GGTGATAAATTTACG Gene: VSAL_II0232: Glycogen debranching enzyme (EC 3.2.1.-) |
|
*
Photobacterium profundum SS9 Site: position = -336 score = 4.70596 sequence = CGTAATAAAAATACG Gene: PBPRB0412: Glycogen debranching enzyme (EC 3.2.1.-) |
Glycogen debranching enzyme (EC 3.2.1.-) |
| CRON 24. | |||||||||||
| pepD |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -211 score = 4.64763 sequence = AGAAATTAAATTACA Site: position = -136 score = 5.10079 sequence = AGTAATTTAATTACA Gene: VC2279: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio vulnificus CMCP6 Site: position = -257 score = 5.3997 sequence = GGTAATTAAATTACA Site: position = -331 score = 4.51647 sequence = AGAAATTTTATTACA Gene: VV1_0333: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -256 score = 5.70329 sequence = TGTAATTAAATTACA Site: position = -330 score = 4.64763 sequence = AGAAATTTAATTACA Gene: VIBHAR_01157: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -329 score = 4.64763 sequence = AGAAATTTAATTACA Site: position = -255 score = 5.70329 sequence = TGTAATTAAATTACA Gene: VP0671: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Gene: VSAK1_12130: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio splendidus LGP32 Site: position = -605 score = 4.52254 sequence = TGTAAAATAATTCCA Site: position = -256 score = 5.50596 sequence = CGTAATTAAATTACA Gene: VS_2422: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio fischeri ES114 Site: position = -200 score = 5.3748 sequence = TGTAATTTTATTACG Site: position = -275 score = 4.64763 sequence = AGAAATTAAATTACA Gene: VF_0736: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio salmonicida LFI1238 Site: position = -198 score = 4.12225 sequence = CGTAACTAAATAACG Site: position = -272 score = 4.60099 sequence = TGAAACTTTATTACA Gene: VSAL_I0973: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Vibrio angustum S14 Site: position = -364 score = 4.4038 sequence = CGTAATTAACTTTCA Gene: VAS14_16781: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
*
Photobacterium profundum SS9 Site: position = -713 score = 4.98797 sequence = CGTAACTTAATTACA Site: position = -639 score = 4.46998 sequence = TGAAAGTTTATTACA Gene: PBPRA0833: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3) |
| CRON 25. | |||||||||||
| grcA |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -247 score = 5.42659 sequence = TGTAGTAAAATTACA Gene: VC2361: Autonomous glycyl radical cofactor |
*
Vibrio vulnificus CMCP6 Site: position = -247 score = 5.03594 sequence = TGTAGTAAATTTACA Gene: VV1_0542: Autonomous glycyl radical cofactor |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -249 score = 5.03594 sequence = TGTAGTAAATTTACA Gene: VIBHAR_00943: Autonomous glycyl radical cofactor |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -249 score = 5.03594 sequence = TGTAGTAAATTTACA Gene: VP0497: Autonomous glycyl radical cofactor |
|
*
Vibrio splendidus LGP32 Site: position = -250 score = 5.03594 sequence = TGTAGTAAATTTACA Gene: VS_0498: Autonomous glycyl radical cofactor |
*
Vibrio fischeri ES114 Site: position = -238 score = 4.73234 sequence = TGTAGTAAATTTACC Site: position = -107 score = 4.36756 sequence = TGTAGTTTTTTGACA Gene: VF_2115: Autonomous glycyl radical cofactor |
*
Vibrio salmonicida LFI1238 Site: position = -235 score = 4.17509 sequence = AGTAAGTTTACTACA Gene: VSAL_I2553: Autonomous glycyl radical cofactor |
*
Vibrio angustum S14 Site: position = -230 score = 4.36756 sequence = TGTAAAATAACAACA Gene: VAS14_07684: Autonomous glycyl radical cofactor |
*
Photobacterium profundum SS9 Site: position = -234 score = 5.42659 sequence = TGTAATTTTACTACA Gene: PBPRA0556: Autonomous glycyl radical cofactor |
Autonomous glycyl radical cofactor |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |