Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio cholerae O1 biovar eltor str. N16961

Properties
Regulator type: Transcription factor
TF locus tag: VC1148
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 19
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -60
Score: 5.2
Sequence: TGTAGTAAAATTACG
Locus tag: VC0336
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VC0336
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -172
Score: 4.1
Sequence: TGTAAGAAATTTTCA
Position: -28
Score: 4.7
Sequence: TGTAATTTTTTTTCA
Locus tag: VC2646
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VC2646
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -256
Score: 5.5
Sequence: TGTAATTAAATTACG
Locus tag: VC0734
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
VC0734
aceB
Malate synthase (EC 2.3.3.9)
Position: -246
Score: 5.3
Sequence: TGTAATAAAATTACC
Locus tag: VC1828
Name: ygaW
Funciton: Putative inner membrane protein
VC1828
ygaW
Putative inner membrane protein
Position: -211
Score: 4.6
Sequence: AGAAATTAAATTACA
Position: -136
Score: 5.1
Sequence: AGTAATTTAATTACA
Locus tag: VC2279
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VC2279
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -487
Score: 5.7
Sequence: TGTAATTTAATTACA
Locus tag: VC2373
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VC2374
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VC2373
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VC2374
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -282
Score: 4.1
Sequence: AGAAATAAAATTTCA
Locus tag: VC1148
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
VC1148
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -55
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VC2000
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VC2000
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -422
Score: 5
Sequence: TGTAGCTTAATTACA
Locus tag: VCA1045
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VCA1046
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VCA1047
Name: mtlR
Funciton: Mannitol operon repressor
VCA1045
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
VCA1046
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
VCA1047
mtlR
Mannitol operon repressor
Position: -85
Score: 5.1
Sequence: CGTAATTGAATTACA
Locus tag: VCA0563
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VCA0564
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VCA0563
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VCA0564
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -138
Score: 4.9
Sequence: TGAAAATTAATTACA
Locus tag: VC0374
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
VC0374
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -42
Score: 4.7
Sequence: TGTAATAAAATAACG
Locus tag: VC1869
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
VC1869
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -99
Score: 5.1
Sequence: TGAAATAAAATTACA
Locus tag: VCA1029
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
VCA1029
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
Position: -249
Score: 4.5
Sequence: TGTAATTTTGTTACT
Position: -98
Score: 4.1
Sequence: TGAAACTTAATTTCG
Locus tag: VC2013
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VC2013
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -247
Score: 5.4
Sequence: TGTAGTAAAATTACA
Locus tag: VC2361
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VC2361
grcA
Autonomous glycyl radical cofactor
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