Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA2430
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 26
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -225
Score: 5.1
Sequence: TGAAATTAAACTACA
Position: -80
Score: 4.4
Sequence: AGTAGTATAATTTCA
Locus tag: PBPRA2430
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
PBPRA2430
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -437
Score: 4.1
Sequence: TGTAATATAACACCA
Locus tag: PBPRA2223
Name: lctP
Funciton: L-lactate permease
PBPRA2223
lctP
L-lactate permease
Position: -389
Score: 4.8
Sequence: CGTTATTTAATTACA
Locus tag: PBPRA2224
Name: dld
Funciton: D-Lactate dehydrogenase (EC 1.1.2.5)
PBPRA2224
dld
D-Lactate dehydrogenase (EC 1.1.2.5)
Position: -163
Score: 4
Sequence: CGAAATAAAGTTTCA
Position: -28
Score: 4.9
Sequence: TGTAACAAAATTACG
Locus tag: PBPRA0265
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
PBPRA0265
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -93
Score: 5.4
Sequence: TGTAGTAAAATTACA
Locus tag: PBPRA0224
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
PBPRA0224
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -174
Score: 5.2
Sequence: TGTAATTTAGTTACA
Locus tag: PBPRA1428
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: PBPRA1427
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
PBPRA1428
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
PBPRA1427
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -303
Score: 5.2
Sequence: GGTAATTAAATTACG
Locus tag: PBPRA0737
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: PBPRA0738
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
PBPRA0737
aceB
Malate synthase (EC 2.3.3.9)
PBPRA0738
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -713
Score: 5
Sequence: CGTAACTTAATTACA
Position: -639
Score: 4.5
Sequence: TGAAAGTTTATTACA
Locus tag: PBPRA0833
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
PBPRA0833
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -295
Score: 4.3
Sequence: TGTAGGATAGTTACA
Locus tag: PBPRA0542
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: PBPRA0541
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
PBPRA0542
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
PBPRA0541
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -137
Score: 5.1
Sequence: TGTAATTTTATTTCA
Locus tag: PBPRB1262
Name: eda
Funciton: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha
PBPRB1262
eda
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) # AroA I alpha
Position: -75
Score: 4.8
Sequence: TGTAGTAATATTTCA
Locus tag: PBPRA2431
Name: pykA
Funciton: Pyruvate kinase (EC 2.7.1.40)
PBPRA2431
pykA
Pyruvate kinase (EC 2.7.1.40)
Position: -428
Score: 4.6
Sequence: CGTAATTTTACGACA
Locus tag: PBPRA2357
Name: lctP
Funciton: L-lactate permease
PBPRA2357
lctP
L-lactate permease
Position: -55
Score: 4.5
Sequence: TGTAATTTTACCACC
Locus tag: PBPRA2602
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
PBPRA2602
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -146
Score: 4.6
Sequence: TGAAATGAAATTACA
Position: -99
Score: 4.3
Sequence: TGTAATTATACATCA
Locus tag: PBPRB0405
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: PBPRB0406
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
PBPRB0405
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
PBPRB0406
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -210
Score: 4.6
Sequence: TGTAATTCACTTACA
Locus tag: PBPRB0363
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: PBPRB0362
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: PBPRB0361
Name: mtlR
Funciton: Mannitol operon repressor
PBPRB0363
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
PBPRB0362
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
PBPRB0361
mtlR
Mannitol operon repressor
Position: -135
Score: 4.2
Sequence: AGTTGTAAAATTACA
Locus tag: PBPRA3328
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
PBPRA3328
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -336
Score: 4.7
Sequence: CGTAATAAAAATACG
Locus tag: PBPRB0412
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
PBPRB0412
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
Position: -298
Score: 5.1
Sequence: TGAAATTTTATTACA
Position: -176
Score: 4.8
Sequence: TGAAATTAAATTTCA
Locus tag: PBPRA1203
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
PBPRA1203
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -234
Score: 5.4
Sequence: TGTAATTTTACTACA
Locus tag: PBPRA0556
Name: grcA
Funciton: Autonomous glycyl radical cofactor
PBPRA0556
grcA
Autonomous glycyl radical cofactor
Position: -18
Score: 4.5
Sequence: TTTAGTTAATTTACA
Locus tag: PBPRA0235
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
PBPRA0235
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
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