Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio vulnificus CMCP6

Properties
Regulator type: Transcription factor
TF locus tag: VV1_2825
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 23
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -90
Score: 5.2
Sequence: TGTAGTAAAATTACG
Locus tag: VV1_1281
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VV1_1281
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -175
Score: 4.7
Sequence: TGTAATAAATTTTCA
Position: -28
Score: 5
Sequence: TGTAATTTTTTTACG
Locus tag: VV1_1369
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VV1_1369
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -310
Score: 5.5
Sequence: TGTAATTAAATTACG
Position: -187
Score: 4.4
Sequence: TGTAAGTTAATTAAA
Locus tag: VV1_0450
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: VV1_0449
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
VV1_0450
aceB
Malate synthase (EC 2.3.3.9)
VV1_0449
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -239
Score: 4.5
Sequence: CGTAATTAAATAACC
Locus tag: VV1_0881
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
VV1_0881
pckA
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -237
Score: 5.4
Sequence: TGTAGTTTAATTACG
Position: -154
Score: 4.3
Sequence: GGTTATTAATTTACA
Locus tag: VV1_2181
Name: ygaW
Funciton: Putative inner membrane protein
VV1_2181
ygaW
Putative inner membrane protein
Position: -331
Score: 4.5
Sequence: AGAAATTTTATTACA
Position: -257
Score: 5.4
Sequence: GGTAATTAAATTACA
Locus tag: VV1_0333
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VV1_0333
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -504
Score: 5.3
Sequence: TGTAAATTAATTACA
Locus tag: VV1_0553
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VV1_0554
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VV1_0553
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VV1_0554
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -55
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VV1_3140
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VV1_3140
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -231
Score: 4.6
Sequence: TGAAAAAATATTACA
Position: -82
Score: 4.7
Sequence: CGTAATTGATTTACA
Locus tag: VV20370
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VV20369
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
VV20370
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
VV20369
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -260
Score: 4.4
Sequence: TGTTATTAACTTACA
Locus tag: VV1_0638
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VV1_0639
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VV1_0640
Name: mtlR
Funciton: Mannitol operon repressor
VV1_0638
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
VV1_0639
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
VV1_0640
mtlR
Mannitol operon repressor
Position: -86
Score: 5.1
Sequence: TGTATTTTAACTACA
Locus tag: VV20317
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VV20316
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Locus tag: VV20315
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VV20317
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VV20316
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VV20315
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -141
Score: 4.7
Sequence: TGAAAAAAAATTACA
Locus tag: VV1_1396
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
VV1_1396
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -46
Score: 4.9
Sequence: TGTAATAAAATAACA
Locus tag: VV1_2095
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
VV1_2095
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -247
Score: 5
Sequence: TGTAGTAAATTTACA
Locus tag: VV1_0542
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VV1_0542
grcA
Autonomous glycyl radical cofactor
Position: -321
Score: 4.5
Sequence: TGTAATTTTGTTACT
Locus tag: VV1_2999
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VV1_2999
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -78
Score: 4.4
Sequence: CGTAGATTTTTTACA
Locus tag: VV1_1343
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VV1_1343
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
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