Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio splendidus LGP32

Properties
Regulator type: Transcription factor
TF locus tag: VS_1834
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 15
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -64
Score: 5.2
Sequence: TGTAGTAAAATTACG
Locus tag: VS_0235
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VS_0235
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -173
Score: 5.3
Sequence: TGTAATTAAATTTCA
Position: -28
Score: 5
Sequence: TGTAATTTTTTTACG
Locus tag: VS_2890
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VS_2890
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -85
Score: 4.7
Sequence: CGTAATTGATTTACA
Locus tag: VS_II0668
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VS_II0669
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
VS_II0668
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
VS_II0669
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -242
Score: 4.4
Sequence: CGTAATAAAATCACC
Locus tag: VS_0131
Name: pckA
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
VS_0131
pckA
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -247
Score: 4.7
Sequence: TGTTGTTTAATTACG
Locus tag: VS_1130
Name: ygaW
Funciton: Putative inner membrane protein
VS_1130
ygaW
Putative inner membrane protein
Position: -605
Score: 4.5
Sequence: TGTAAAATAATTCCA
Position: -256
Score: 5.5
Sequence: CGTAATTAAATTACA
Locus tag: VS_2422
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VS_2422
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -484
Score: 4.7
Sequence: TGAAAAAAAATTACA
Locus tag: VS_0474
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VS_0473
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VS_0474
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VS_0473
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -366
Score: 4.5
Sequence: TGTAACTTAATTAAA
Locus tag: VS_1082
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VS_1083
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
VS_1082
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
VS_1083
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -143
Score: 4.7
Sequence: TGAAAAAAAATTACA
Locus tag: VS_0288
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
VS_0288
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -250
Score: 5
Sequence: TGTAGTAAATTTACA
Locus tag: VS_0498
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VS_0498
grcA
Autonomous glycyl radical cofactor
Position: -322
Score: 4.5
Sequence: TGTAATTTTGTTACT
Position: -172
Score: 4.1
Sequence: TGAAACTAAATTTCG
Locus tag: VS_1032
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VS_1032
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -70
Score: 4.1
Sequence: TGTTATATTATTTCG
Locus tag: VS_2912
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VS_2912
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
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