Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio fischeri ES114

Properties
Regulator type: Transcription factor
TF locus tag: VF_0891
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 21
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -63
Score: 5.4
Sequence: TGTAGTAAAATTACA
Locus tag: VF_0202
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VF_0202
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -206
Score: 5.2
Sequence: TGTAAAATAATTACA
Locus tag: VF_1894
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VF_1895
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VF_1897
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VF_1894
ptsH
Phosphocarrier protein of PTS system
VF_1895
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VF_1897
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -177
Score: 4.7
Sequence: TGAAATAAATTTACA
Position: -31
Score: 5.1
Sequence: TGTAACAAAATTACA
Locus tag: VF_2308
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VF_2308
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -148
Score: 4.6
Sequence: TGTTATTAAAATACA
Locus tag: VF_0891
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
VF_0891
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
Position: -184
Score: 5
Sequence: TGTAAAAAAACTACA
Locus tag: VF_0776
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VF_0775
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
VF_0776
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
VF_0775
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -295
Score: 5.5
Sequence: TGTAATTTAATTACG
Locus tag: VF_1973
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: VF_1972
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
VF_1973
aceB
Malate synthase (EC 2.3.3.9)
VF_1972
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -226
Score: 5.3
Sequence: TGTAATTTTATTACC
Position: -164
Score: 5
Sequence: TGTAAATTTACTACA
Locus tag: VF_0967
Name: ygaW
Funciton: Putative inner membrane protein
VF_0967
ygaW
Putative inner membrane protein
Position: -275
Score: 4.6
Sequence: AGAAATTAAATTACA
Position: -200
Score: 5.4
Sequence: TGTAATTTTATTACG
Locus tag: VF_0736
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VF_0736
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -299
Score: 4.3
Sequence: TGTAGGATAGTTACA
Locus tag: VF_2124
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VF_2125
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VF_2124
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VF_2125
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -62
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VF_0913
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VF_0913
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -84
Score: 4.1
Sequence: TGTAAATAATTTATG
Locus tag: VF_A0806
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VF_A0805
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
VF_A0806
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
VF_A0805
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -87
Score: 4.9
Sequence: TGTCATTTTATTACA
Locus tag: VF_A0586
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VF_A0585
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VF_A0586
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VF_A0585
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -238
Score: 4.7
Sequence: TGTAGTAAATTTACC
Position: -107
Score: 4.4
Sequence: TGTAGTTTTTTGACA
Locus tag: VF_2115
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VF_2115
grcA
Autonomous glycyl radical cofactor
Position: -52
Score: 4.2
Sequence: TGTTATATTTTTACG
Locus tag: VF_0206
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VF_0206
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
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