Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio salmonicida LFI1238

Properties
Regulator type: Transcription factor
TF locus tag: VSAL_I2031
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 22
- Operons 15
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -205
Score: 5.2
Sequence: TGTAAAATAATTACA
Locus tag: VSAL_I2357
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VSAL_I2358
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VSAL_I2359
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VSAL_I2357
ptsH
Phosphocarrier protein of PTS system
VSAL_I2358
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VSAL_I2359
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -45
Score: 5.4
Sequence: TGTAGTAAAATTACA
Locus tag: VSAL_I3050
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VSAL_I3050
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -175
Score: 4.7
Sequence: TGAAATAAATTTACA
Position: -30
Score: 5.6
Sequence: TGTAATAAAATTACA
Locus tag: VSAL_I2754
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VSAL_I2754
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -295
Score: 5.4
Sequence: TGTAATTTTATTACG
Locus tag: VSAL_I2439
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: VSAL_I2438
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
VSAL_I2439
aceB
Malate synthase (EC 2.3.3.9)
VSAL_I2438
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -275
Score: 5.1
Sequence: TGAAATTAAATTACG
Position: -213
Score: 5
Sequence: TGTAAATTTACTACA
Locus tag: VSAL_I1909
Name: ygaW
Funciton: Putative inner membrane protein
VSAL_I1909
ygaW
Putative inner membrane protein
Position: -272
Score: 4.6
Sequence: TGAAACTTTATTACA
Position: -198
Score: 4.1
Sequence: CGTAACTAAATAACG
Locus tag: VSAL_I0973
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VSAL_I0973
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -357
Score: 5.3
Sequence: TGAAATTAAATTACA
Position: -306
Score: 4.5
Sequence: TGTCATTTTATTTCA
Locus tag: VSAL_I1956
Name: focA
Funciton: Formate efflux transporter (TC 2.A.44 family)
VSAL_I1956
focA
Formate efflux transporter (TC 2.A.44 family)
Position: -63
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VSAL_I1849
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VSAL_I1849
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -184
Score: 5.2
Sequence: TGTAATAAAACTACG
Position: -77
Score: 4.6
Sequence: CGTAATTGATCTACA
Locus tag: VSAL_I0798
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VSAL_I0797
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
VSAL_I0798
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
VSAL_I0797
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -147
Score: 4
Sequence: GGTGATAAATTTACG
Locus tag: VSAL_II0232
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
VSAL_II0232
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
Position: -422
Score: 4.9
Sequence: CGTAATAAAATTTCA
Position: -207
Score: 4.6
Sequence: TGTAGTAAATTTTCA
Locus tag: VSAL_I2813
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VSAL_I2814
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VSAL_I2815
Name: mtlR
Funciton: Mannitol operon repressor
VSAL_I2813
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
VSAL_I2814
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
VSAL_I2815
mtlR
Mannitol operon repressor
Position: -87
Score: 4.9
Sequence: TGTCATTTTATTACA
Locus tag: VSAL_II0623
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VSAL_II0624
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VSAL_II0623
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VSAL_II0624
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -235
Score: 4.2
Sequence: AGTAAGTTTACTACA
Locus tag: VSAL_I2553
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VSAL_I2553
grcA
Autonomous glycyl radical cofactor
Position: -52
Score: 4.2
Sequence: TGTTATATTTTTACG
Locus tag: VSAL_I0283
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VSAL_I0283
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
Position: -274
Score: 4
Sequence: TGAAAATAAACCACA
Locus tag: VSAL_I2031
Name: hexR
Funciton: Central carbohydrate metabolism transcription regulator HexR, RpiR family
VSAL_I2031
hexR
Central carbohydrate metabolism transcription regulator HexR, RpiR family
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