Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VP1236
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 22
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -91
Score: 5.2
Sequence: TGTAGTAAAATTACG
Locus tag: VP2829
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VP2829
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -174
Score: 4.9
Sequence: TGTAATTAATTTTCA
Position: -28
Score: 4.8
Sequence: TGTAGTTTTTTTACG
Locus tag: VP2761
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VP2761
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -329
Score: 4.6
Sequence: AGAAATTTAATTACA
Position: -255
Score: 5.7
Sequence: TGTAATTAAATTACA
Locus tag: VP0671
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VP0671
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -305
Score: 5.5
Sequence: TGTAATTAAATTACG
Locus tag: VP0583
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: VP0584
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
VP0583
aceB
Malate synthase (EC 2.3.3.9)
VP0584
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -84
Score: 4.9
Sequence: TGTAATTGATTTACA
Locus tag: VPA0987
Name: nirB
Funciton: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Locus tag: VPA0986
Name: nirD
Funciton: Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
VPA0987
nirB
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
VPA0986
nirD
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4)
Position: -150
Score: 4.3
Sequence: GGTTATTAATTTACA
Locus tag: VP1070
Name: ygaW
Funciton: Putative inner membrane protein
VP1070
ygaW
Putative inner membrane protein
Position: -308
Score: 5.2
Sequence: TGTAACTAAATTACA
Locus tag: VP0484
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VP0483
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VP0484
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VP0483
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -55
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VP2157
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VP2157
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -211
Score: 4.5
Sequence: TGTTATTAAGTTACA
Locus tag: VP0370
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VP0369
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VP0368
Name: mtlR
Funciton: Mannitol operon repressor
VP0370
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
VP0369
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
VP0368
mtlR
Mannitol operon repressor
Position: -227
Score: 4.6
Sequence: AGTATTTAAATTACA
Locus tag: VPA0922
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VPA0921
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VPA0922
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VPA0921
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -138
Score: 4.7
Sequence: TGAAAAAAAATTACA
Locus tag: VP2731
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
VP2731
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -45
Score: 4.9
Sequence: TGTAATAAAATAACA
Locus tag: VP0992
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
VP0992
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -114
Score: 5.1
Sequence: AGTAATTAAATTACA
Locus tag: VPA1645
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
VPA1645
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
Position: -55
Score: 4.4
Sequence: CGTAGATTTTTTACA
Locus tag: VP0239
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VP0239
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
Position: -322
Score: 4.5
Sequence: TGTAATTTTGTTACT
Position: -291
Score: 4.6
Sequence: TGTATTTTATTTACG
Locus tag: VP2046
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VP2046
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -249
Score: 5
Sequence: TGTAGTAAATTTACA
Locus tag: VP0497
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VP0497
grcA
Autonomous glycyl radical cofactor
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