Regulog TPP - Vibrionales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Vibrionales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Vibrio cholerae O1 biovar eltor str. N16961	10	3
Vibrio vulnificus CMCP6	10	3
Vibrio harveyi ATCC BAA-1116	16	3
Vibrio parahaemolyticus RIMD 2210633	16	3
Vibrio shilonii AK1	14	3
Vibrio splendidus LGP32	15	3
Vibrio fischeri ES114	16	3
Vibrio salmonicida LFI1238	16	3
Vibrio angustum S14	10	3
Photobacterium profundum SS9	13	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes											Function

CRON 1.
thiD	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -307 score = 54.39 sequence = TCCTGTAGTCGGGGA... Gene: VC1296: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio vulnificus CMCP6 Site: position = -188 score = 77.5 sequence = GCCAACATAGTCGGG... Gene: VV21433: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio harveyi ATCC BAA-1116 Site: position = -218 score = 71.94 sequence = CGAAATAGTCGGGGG... Gene: VIBHAR_06838: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -205 score = 71.54 sequence = AGCGAAATAGTCGGG... Gene: VPA0136: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio shilonii AK1 Site: position = -171 score = 71.29 sequence = CTCATTAGTCGGGGA... Gene: VSAK1_11975: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio splendidus LGP32 Site: position = -209 score = 68.88 sequence = CTATCAATAGTCGGG... Gene: VS_II1090: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio fischeri ES114 Site: position = -199 score = 73.0 sequence = GCCATTAGTCGGGGA... Gene: VF_A0316: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio salmonicida LFI1238 Site: position = -197 score = 72.87 sequence = GGCATTAGTCGGGGA... Gene: VSAL_II0486: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Vibrio angustum S14 Site: position = -201 score = 67.26 sequence = TGAGAGTTAGTCGGG... Gene: VAS14_01541: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	* Photobacterium profundum SS9 Site: position = -177 score = 71.4 sequence = AGCTTGTTAGTCGGG... Gene: PBPRB0688: Phosphomethylpyrimidine kinase (EC 2.7.4.7)	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiZ	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06839: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0135: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio shilonii AK1 Gene: VSAK1_11980: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio splendidus LGP32 Gene: VS_II1089: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio fischeri ES114 Gene: VF_A0317: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio salmonicida LFI1238 Gene: VSAL_II0487: Hydroxymethylpyrimidine ABC transporter, ATPase component	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0687: Hydroxymethylpyrimidine ABC transporter, ATPase component	Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06840: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0134: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio shilonii AK1 Gene: VSAK1_11985: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio splendidus LGP32 Gene: VS_II1088: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio fischeri ES114 Gene: VF_A0318: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio salmonicida LFI1238 Gene: VSAL_II0488: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0686: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06841: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0133: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio shilonii AK1 Gene: VSAK1_11990: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio splendidus LGP32 Gene: VS_II1087: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio fischeri ES114 Gene: VF_A0319: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio salmonicida LFI1238 Gene: VSAL_II0489: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0685: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Hydroxymethylpyrimidine ABC transporter, substrate-binding component
tenA	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06842: Thiaminase II (EC 3.5.99.2)	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0132: Thiaminase II (EC 3.5.99.2)	Vibrio shilonii AK1 Gene: VSAK1_11995: Thiaminase II (EC 3.5.99.2)	Vibrio splendidus LGP32 Gene: VS_II1086: Thiaminase II (EC 3.5.99.2)	Vibrio fischeri ES114 Gene: VF_A0320: Thiaminase II (EC 3.5.99.2)	Vibrio salmonicida LFI1238 Gene: VSAL_II0490: Thiaminase II (EC 3.5.99.2)	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRB0684: Thiaminase II (EC 3.5.99.2)	Thiaminase II (EC 3.5.99.2)
thiM	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06843: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0131: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio shilonii AK1 Gene: VSAK1_18649: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio splendidus LGP32 Gene: VS_II1085: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio fischeri ES114 Gene: VF_A0321: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio salmonicida LFI1238 Gene: VSAL_II0491: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Vibrio angustum S14	Photobacterium profundum SS9 Gene: PBPRA2337: Hydroxyethylthiazole kinase (EC 2.7.1.50)	Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE2	Vibrio cholerae O1 biovar eltor str. N16961	Vibrio vulnificus CMCP6	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_06844: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio parahaemolyticus RIMD 2210633 Gene: VPA0130: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio shilonii AK1 Gene: VSAK1_18654: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio splendidus LGP32 Gene: VS_II1083: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio fischeri ES114 Gene: VF_A0322: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio salmonicida LFI1238 Gene: VSAL_II0492: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio angustum S14	Photobacterium profundum SS9	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

CRON 2.
thiB	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -128 score = 31.05 sequence = TGCGATGTTCGCGGT... Gene: VC2539: Thiamin ABC transporter, substrate-binding component	* Vibrio vulnificus CMCP6 Site: position = -193 score = 62.88 sequence = GAACCACTCATCGGG... Gene: VV1_0703: Thiamin ABC transporter, substrate-binding component	* Vibrio harveyi ATCC BAA-1116 Site: position = -217 score = 49.11 sequence = CCAACTCATCGGGGA... Gene: VIBHAR_00788: Thiamin ABC transporter, substrate-binding component	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -208 score = 54.65 sequence = CCAACTCATCGGGGA... Gene: VP0316: Thiamin ABC transporter, substrate-binding component	* Vibrio shilonii AK1 Site: position = -160 score = 68.28 sequence = TGTGACTCACGGGGT... Gene: VSAK1_01889: Thiamin ABC transporter, substrate-binding component	* Vibrio splendidus LGP32 Site: position = -174 score = 57.92 sequence = TGAACACTCATCGGG... Gene: VS_2767: Thiamin ABC transporter, substrate-binding component	* Vibrio fischeri ES114 Site: position = -165 score = 60.61 sequence = ACTTCTCATCGGGGA... Gene: VF_0267: Thiamin ABC transporter, substrate-binding component	* Vibrio salmonicida LFI1238 Site: position = -164 score = 59.44 sequence = GCCTCTCATCGGGGA... Gene: VSAL_I0349: Thiamin ABC transporter, substrate-binding component	* Vibrio angustum S14 Site: position = -217 score = 71.3 sequence = TGTTCTCATTGGGGA... Gene: VAS14_08195: Thiamin ABC transporter, substrate-binding component	* Photobacterium profundum SS9 Site: position = -289 score = 64.04 sequence = ACCGTTCTCATTGGG... Gene: PBPRA0413: Thiamin ABC transporter, substrate-binding component	Thiamin ABC transporter, substrate-binding component
thiP	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2538: Thiamin ABC transporter, transmembrane component	Vibrio vulnificus CMCP6 Gene: VV1_0702: Thiamin ABC transporter, transmembrane component	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00789: Thiamin ABC transporter, transmembrane component	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0317: Thiamin ABC transporter, transmembrane component	Vibrio shilonii AK1 Gene: VSAK1_01894: Thiamin ABC transporter, transmembrane component	Vibrio splendidus LGP32 Gene: VS_2766: Thiamin ABC transporter, transmembrane component	Vibrio fischeri ES114 Gene: VF_0268: Thiamin ABC transporter, transmembrane component	Vibrio salmonicida LFI1238 Gene: VSAL_I0350: Thiamin ABC transporter, transmembrane component	Vibrio angustum S14 Gene: VAS14_08200: Thiamin ABC transporter, transmembrane component	Photobacterium profundum SS9 Gene: PBPRA0412: Thiamin ABC transporter, transmembrane component	Thiamin ABC transporter, transmembrane component
thiQ	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC2537: Thiamin ABC transporter, ATPase component	Vibrio vulnificus CMCP6 Gene: VV1_0701: Thiamin ABC transporter, ATPase component	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00790: Thiamin ABC transporter, ATPase component	Vibrio parahaemolyticus RIMD 2210633 Gene: VP0318: Thiamin ABC transporter, ATPase component	Vibrio shilonii AK1 Gene: VSAK1_01899: Thiamin ABC transporter, ATPase component	Vibrio splendidus LGP32 Gene: VS_2765: Thiamin ABC transporter, ATPase component	Vibrio fischeri ES114 Gene: VF_0269: Thiamin ABC transporter, ATPase component	Vibrio salmonicida LFI1238 Gene: VSAL_I0351: Thiamin ABC transporter, ATPase component	Vibrio angustum S14 Gene: VAS14_08205: Thiamin ABC transporter, ATPase component	Photobacterium profundum SS9 Gene: PBPRA0411: Thiamin ABC transporter, ATPase component	Thiamin ABC transporter, ATPase component

CRON 3.
thiC	* Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -198 score = 76.24 sequence = TCCACTTGTCGGAGT... Gene: VC0061: Thiamin biosynthesis protein ThiC	* Vibrio vulnificus CMCP6 Site: position = -246 score = 75.47 sequence = GTTTCACTTGTCGGA... Gene: VV1_0964: Thiamin biosynthesis protein ThiC	* Vibrio harveyi ATCC BAA-1116 Site: position = -265 score = 69.71 sequence = ATTTCACTTGTCGGA... Gene: VIBHAR_00366: Thiamin biosynthesis protein ThiC	* Vibrio parahaemolyticus RIMD 2210633 Site: position = -268 score = 73.91 sequence = GCTTCACTTGTCGGA... Gene: VP3027: Thiamin biosynthesis protein ThiC	* Vibrio shilonii AK1 Site: position = -217 score = 78.0 sequence = TCAATACTTGTCGGA... Gene: VSAK1_24309: Thiamin biosynthesis protein ThiC	* Vibrio splendidus LGP32 Site: position = -229 score = 80.29 sequence = ATCGAACTTGTCGGA... Gene: VS_3098: Thiamin biosynthesis protein ThiC	* Vibrio fischeri ES114 Site: position = -301 score = 77.76 sequence = GAAACTTGTCGGAGT... Gene: VF_0032: Thiamin biosynthesis protein ThiC	* Vibrio salmonicida LFI1238 Site: position = -271 score = 77.65 sequence = GAAACTTGTCGGAGT... Gene: VSAL_I2983: Thiamin biosynthesis protein ThiC	* Vibrio angustum S14 Site: position = -215 score = 79.48 sequence = GCTACTTGTCGGAGT... Gene: VAS14_22704: Thiamin biosynthesis protein ThiC	* Photobacterium profundum SS9 Site: position = -234 score = 81.84 sequence = GAAACTTGTCGGAGT... Gene: PBPRA0106: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiE	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0062: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio vulnificus CMCP6 Gene: VV1_0963: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00365: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio parahaemolyticus RIMD 2210633 Gene: VP3026: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio shilonii AK1 Gene: VSAK1_24304: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio splendidus LGP32 Gene: VS_3097: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio fischeri ES114 Gene: VF_0033: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio salmonicida LFI1238 Gene: VSAL_I2984: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Vibrio angustum S14 Gene: VAS14_22709: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Photobacterium profundum SS9 Gene: PBPRA0107: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0063: Sulfur carrier protein adenylyltransferase ThiF	Vibrio vulnificus CMCP6 Gene: VV1_0962: Sulfur carrier protein adenylyltransferase ThiF	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00364: Sulfur carrier protein adenylyltransferase ThiF	Vibrio parahaemolyticus RIMD 2210633 Gene: VP3025: Sulfur carrier protein adenylyltransferase ThiF	Vibrio shilonii AK1 Gene: VSAK1_24299: Sulfur carrier protein adenylyltransferase ThiF	Vibrio splendidus LGP32 Gene: VS_3096: Sulfur carrier protein adenylyltransferase ThiF	Vibrio fischeri ES114 Gene: VF_0034: Sulfur carrier protein adenylyltransferase ThiF	Vibrio salmonicida LFI1238 Gene: VSAL_I2985: Sulfur carrier protein adenylyltransferase ThiF	Vibrio angustum S14 Gene: VAS14_22714: Sulfur carrier protein adenylyltransferase ThiF	Photobacterium profundum SS9 Gene: PBPRA0108: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF
thiS	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0064: Sulfur carrier protein ThiS	Vibrio vulnificus CMCP6 Gene: VV1_0961: Sulfur carrier protein ThiS	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00363: Sulfur carrier protein ThiS	Vibrio parahaemolyticus RIMD 2210633 Gene: VP3024: Sulfur carrier protein ThiS	Vibrio shilonii AK1 Gene: VSAK1_24294: Sulfur carrier protein ThiS	Vibrio splendidus LGP32 Gene: VS_3095: Sulfur carrier protein ThiS	Vibrio fischeri ES114 Gene: VF_2576: Sulfur carrier protein ThiS	Vibrio salmonicida LFI1238 Gene: VSAL_I2986: Sulfur carrier protein ThiS	Vibrio angustum S14 Gene: VAS14_22719: Sulfur carrier protein ThiS	Photobacterium profundum SS9	Sulfur carrier protein ThiS
thiG	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0065: Thiazole biosynthesis protein ThiG	Vibrio vulnificus CMCP6 Gene: VV1_0960: Thiazole biosynthesis protein ThiG	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00362: Thiazole biosynthesis protein ThiG	Vibrio parahaemolyticus RIMD 2210633 Gene: VP3023: Thiazole biosynthesis protein ThiG	Vibrio shilonii AK1 Gene: VSAK1_24289: Thiazole biosynthesis protein ThiG	Vibrio splendidus LGP32 Gene: VS_3094: Thiazole biosynthesis protein ThiG	Vibrio fischeri ES114 Gene: VF_0035: Thiazole biosynthesis protein ThiG	Vibrio salmonicida LFI1238 Gene: VSAL_I2987: Thiazole biosynthesis protein ThiG	Vibrio angustum S14 Gene: VAS14_22724: Thiazole biosynthesis protein ThiG	Photobacterium profundum SS9 Gene: PBPRA0109: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiH	Vibrio cholerae O1 biovar eltor str. N16961 Gene: VC0066: Thiazole biosynthesis protein ThiH	Vibrio vulnificus CMCP6 Gene: VV1_0959: Thiazole biosynthesis protein ThiH	Vibrio harveyi ATCC BAA-1116 Gene: VIBHAR_00361: Thiazole biosynthesis protein ThiH	Vibrio parahaemolyticus RIMD 2210633 Gene: VP3022: Thiazole biosynthesis protein ThiH	Vibrio shilonii AK1 Gene: VSAK1_24284: Thiazole biosynthesis protein ThiH	Vibrio splendidus LGP32 Gene: VS_3093: Thiazole biosynthesis protein ThiH	Vibrio fischeri ES114 Gene: VF_0036: Thiazole biosynthesis protein ThiH	Vibrio salmonicida LFI1238 Gene: VSAL_I2988: Thiazole biosynthesis protein ThiH	Vibrio angustum S14 Gene: VAS14_22729: Thiazole biosynthesis protein ThiH	Photobacterium profundum SS9 Gene: PBPRA0110: Thiazole biosynthesis protein ThiH	Thiazole biosynthesis protein ThiH

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Vibrionales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --