Regulog TPP - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | 10 | 3 |
| Vibrio vulnificus CMCP6 | 10 | 3 |
| Vibrio harveyi ATCC BAA-1116 | 16 | 3 |
| Vibrio parahaemolyticus RIMD 2210633 | 16 | 3 |
| Vibrio shilonii AK1 | 14 | 3 |
| Vibrio splendidus LGP32 | 15 | 3 |
| Vibrio fischeri ES114 | 16 | 3 |
| Vibrio salmonicida LFI1238 | 16 | 3 |
| Vibrio angustum S14 | 10 | 3 |
| Photobacterium profundum SS9 | 13 | 3 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| thiD |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -307 score = 54.39 sequence = TCCTGTAGTCGGGGA... Gene: VC1296: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio vulnificus CMCP6 Site: position = -188 score = 77.5 sequence = GCCAACATAGTCGGG... Gene: VV21433: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -218 score = 71.94 sequence = CGAAATAGTCGGGGG... Gene: VIBHAR_06838: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -205 score = 71.54 sequence = AGCGAAATAGTCGGG... Gene: VPA0136: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio shilonii AK1 Site: position = -171 score = 71.29 sequence = CTCATTAGTCGGGGA... Gene: VSAK1_11975: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio splendidus LGP32 Site: position = -209 score = 68.88 sequence = CTATCAATAGTCGGG... Gene: VS_II1090: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio fischeri ES114 Site: position = -199 score = 73.0 sequence = GCCATTAGTCGGGGA... Gene: VF_A0316: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio salmonicida LFI1238 Site: position = -197 score = 72.87 sequence = GGCATTAGTCGGGGA... Gene: VSAL_II0486: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Vibrio angustum S14 Site: position = -201 score = 67.26 sequence = TGAGAGTTAGTCGGG... Gene: VAS14_01541: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Photobacterium profundum SS9 Site: position = -177 score = 71.4 sequence = AGCTTGTTAGTCGGG... Gene: PBPRB0688: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiZ |
|
|
Gene: VIBHAR_06839: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: VPA0135: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: VSAK1_11980: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: VS_II1089: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: VF_A0317: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: VSAL_II0487: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
Gene: PBPRB0687: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
|
|
Gene: VIBHAR_06840: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: VPA0134: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: VSAK1_11985: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: VS_II1088: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: VF_A0318: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: VSAL_II0488: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
Gene: PBPRB0686: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
|
|
Gene: VIBHAR_06841: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: VPA0133: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: VSAK1_11990: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: VS_II1087: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: VF_A0319: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: VSAL_II0489: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
Gene: PBPRB0685: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| tenA |
|
|
Gene: VIBHAR_06842: Thiaminase II (EC 3.5.99.2) |
Gene: VPA0132: Thiaminase II (EC 3.5.99.2) |
Gene: VSAK1_11995: Thiaminase II (EC 3.5.99.2) |
Gene: VS_II1086: Thiaminase II (EC 3.5.99.2) |
Gene: VF_A0320: Thiaminase II (EC 3.5.99.2) |
Gene: VSAL_II0490: Thiaminase II (EC 3.5.99.2) |
|
Gene: PBPRB0684: Thiaminase II (EC 3.5.99.2) |
Thiaminase II (EC 3.5.99.2) |
| thiM |
|
|
Gene: VIBHAR_06843: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: VPA0131: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: VSAK1_18649: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: VS_II1085: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: VF_A0321: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Gene: VSAL_II0491: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
Gene: PBPRA2337: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiE2 |
|
|
Gene: VIBHAR_06844: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VPA0130: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VSAK1_18654: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VS_II1083: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VF_A0322: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VSAL_II0492: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
|
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| CRON 2. | |||||||||||
| thiB |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -128 score = 31.05 sequence = TGCGATGTTCGCGGT... Gene: VC2539: Thiamin ABC transporter, substrate-binding component |
*
Vibrio vulnificus CMCP6 Site: position = -193 score = 62.88 sequence = GAACCACTCATCGGG... Gene: VV1_0703: Thiamin ABC transporter, substrate-binding component |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -217 score = 49.11 sequence = CCAACTCATCGGGGA... Gene: VIBHAR_00788: Thiamin ABC transporter, substrate-binding component |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -208 score = 54.65 sequence = CCAACTCATCGGGGA... Gene: VP0316: Thiamin ABC transporter, substrate-binding component |
*
Vibrio shilonii AK1 Site: position = -160 score = 68.28 sequence = TGTGACTCACGGGGT... Gene: VSAK1_01889: Thiamin ABC transporter, substrate-binding component |
*
Vibrio splendidus LGP32 Site: position = -174 score = 57.92 sequence = TGAACACTCATCGGG... Gene: VS_2767: Thiamin ABC transporter, substrate-binding component |
*
Vibrio fischeri ES114 Site: position = -165 score = 60.61 sequence = ACTTCTCATCGGGGA... Gene: VF_0267: Thiamin ABC transporter, substrate-binding component |
*
Vibrio salmonicida LFI1238 Site: position = -164 score = 59.44 sequence = GCCTCTCATCGGGGA... Gene: VSAL_I0349: Thiamin ABC transporter, substrate-binding component |
*
Vibrio angustum S14 Site: position = -217 score = 71.3 sequence = TGTTCTCATTGGGGA... Gene: VAS14_08195: Thiamin ABC transporter, substrate-binding component |
*
Photobacterium profundum SS9 Site: position = -289 score = 64.04 sequence = ACCGTTCTCATTGGG... Gene: PBPRA0413: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: VC2538: Thiamin ABC transporter, transmembrane component |
Gene: VV1_0702: Thiamin ABC transporter, transmembrane component |
Gene: VIBHAR_00789: Thiamin ABC transporter, transmembrane component |
Gene: VP0317: Thiamin ABC transporter, transmembrane component |
Gene: VSAK1_01894: Thiamin ABC transporter, transmembrane component |
Gene: VS_2766: Thiamin ABC transporter, transmembrane component |
Gene: VF_0268: Thiamin ABC transporter, transmembrane component |
Gene: VSAL_I0350: Thiamin ABC transporter, transmembrane component |
Gene: VAS14_08200: Thiamin ABC transporter, transmembrane component |
Gene: PBPRA0412: Thiamin ABC transporter, transmembrane component |
Thiamin ABC transporter, transmembrane component |
| thiQ |
Gene: VC2537: Thiamin ABC transporter, ATPase component |
Gene: VV1_0701: Thiamin ABC transporter, ATPase component |
Gene: VIBHAR_00790: Thiamin ABC transporter, ATPase component |
Gene: VP0318: Thiamin ABC transporter, ATPase component |
Gene: VSAK1_01899: Thiamin ABC transporter, ATPase component |
Gene: VS_2765: Thiamin ABC transporter, ATPase component |
Gene: VF_0269: Thiamin ABC transporter, ATPase component |
Gene: VSAL_I0351: Thiamin ABC transporter, ATPase component |
Gene: VAS14_08205: Thiamin ABC transporter, ATPase component |
Gene: PBPRA0411: Thiamin ABC transporter, ATPase component |
Thiamin ABC transporter, ATPase component |
| CRON 3. | |||||||||||
| thiC |
*
Vibrio cholerae O1 biovar eltor str. N16961 Site: position = -198 score = 76.24 sequence = TCCACTTGTCGGAGT... Gene: VC0061: Thiamin biosynthesis protein ThiC |
*
Vibrio vulnificus CMCP6 Site: position = -246 score = 75.47 sequence = GTTTCACTTGTCGGA... Gene: VV1_0964: Thiamin biosynthesis protein ThiC |
*
Vibrio harveyi ATCC BAA-1116 Site: position = -265 score = 69.71 sequence = ATTTCACTTGTCGGA... Gene: VIBHAR_00366: Thiamin biosynthesis protein ThiC |
*
Vibrio parahaemolyticus RIMD 2210633 Site: position = -268 score = 73.91 sequence = GCTTCACTTGTCGGA... Gene: VP3027: Thiamin biosynthesis protein ThiC |
*
Vibrio shilonii AK1 Site: position = -217 score = 78.0 sequence = TCAATACTTGTCGGA... Gene: VSAK1_24309: Thiamin biosynthesis protein ThiC |
*
Vibrio splendidus LGP32 Site: position = -229 score = 80.29 sequence = ATCGAACTTGTCGGA... Gene: VS_3098: Thiamin biosynthesis protein ThiC |
*
Vibrio fischeri ES114 Site: position = -301 score = 77.76 sequence = GAAACTTGTCGGAGT... Gene: VF_0032: Thiamin biosynthesis protein ThiC |
*
Vibrio salmonicida LFI1238 Site: position = -271 score = 77.65 sequence = GAAACTTGTCGGAGT... Gene: VSAL_I2983: Thiamin biosynthesis protein ThiC |
*
Vibrio angustum S14 Site: position = -215 score = 79.48 sequence = GCTACTTGTCGGAGT... Gene: VAS14_22704: Thiamin biosynthesis protein ThiC |
*
Photobacterium profundum SS9 Site: position = -234 score = 81.84 sequence = GAAACTTGTCGGAGT... Gene: PBPRA0106: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiE |
Gene: VC0062: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VV1_0963: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VIBHAR_00365: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VP3026: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VSAK1_24304: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VS_3097: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VF_0033: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VSAL_I2984: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: VAS14_22709: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PBPRA0107: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
Gene: VC0063: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VV1_0962: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VIBHAR_00364: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VP3025: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VSAK1_24299: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VS_3096: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VF_0034: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VSAL_I2985: Sulfur carrier protein adenylyltransferase ThiF |
Gene: VAS14_22714: Sulfur carrier protein adenylyltransferase ThiF |
Gene: PBPRA0108: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
| thiS |
Gene: VC0064: Sulfur carrier protein ThiS |
Gene: VV1_0961: Sulfur carrier protein ThiS |
Gene: VIBHAR_00363: Sulfur carrier protein ThiS |
Gene: VP3024: Sulfur carrier protein ThiS |
Gene: VSAK1_24294: Sulfur carrier protein ThiS |
Gene: VS_3095: Sulfur carrier protein ThiS |
Gene: VF_2576: Sulfur carrier protein ThiS |
Gene: VSAL_I2986: Sulfur carrier protein ThiS |
Gene: VAS14_22719: Sulfur carrier protein ThiS |
|
Sulfur carrier protein ThiS |
| thiG |
Gene: VC0065: Thiazole biosynthesis protein ThiG |
Gene: VV1_0960: Thiazole biosynthesis protein ThiG |
Gene: VIBHAR_00362: Thiazole biosynthesis protein ThiG |
Gene: VP3023: Thiazole biosynthesis protein ThiG |
Gene: VSAK1_24289: Thiazole biosynthesis protein ThiG |
Gene: VS_3094: Thiazole biosynthesis protein ThiG |
Gene: VF_0035: Thiazole biosynthesis protein ThiG |
Gene: VSAL_I2987: Thiazole biosynthesis protein ThiG |
Gene: VAS14_22724: Thiazole biosynthesis protein ThiG |
Gene: PBPRA0109: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiH |
Gene: VC0066: Thiazole biosynthesis protein ThiH |
Gene: VV1_0959: Thiazole biosynthesis protein ThiH |
Gene: VIBHAR_00361: Thiazole biosynthesis protein ThiH |
Gene: VP3022: Thiazole biosynthesis protein ThiH |
Gene: VSAK1_24284: Thiazole biosynthesis protein ThiH |
Gene: VS_3093: Thiazole biosynthesis protein ThiH |
Gene: VF_0036: Thiazole biosynthesis protein ThiH |
Gene: VSAL_I2988: Thiazole biosynthesis protein ThiH |
Gene: VAS14_22729: Thiazole biosynthesis protein ThiH |
Gene: PBPRA0110: Thiazole biosynthesis protein ThiH |
Thiazole biosynthesis protein ThiH |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |