Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PhsR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator
Biological process: Thiosulfate reduction
Effector: Thiosulfate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114 6 2
Vibrio harveyi ATCC BAA-1116 2 2
Vibrio parahaemolyticus RIMD 2210633 6 2
Vibrio salmonicida LFI1238
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phsS
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio fischeri ES114

Site:
position = -212
score = 7.49854
sequence = ACTATTGTGGTAAACCACAATAAT

Gene: VF_A0102: Thiosulfate reduction sensor protein PhsS
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -225
score = 7.28224
sequence = GGTATTGTGGTTTCCCACAATAAT

Gene: VP1201: Thiosulfate reduction sensor protein PhsS
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Thiosulfate reduction sensor protein PhsS
phsR
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114

Gene: VF_A0103: Thiosulfate reduction response regulator protein PhsR, LuxR family
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -1904
score = 7.20502
sequence = GATATTGTGGTTTCCCACAATAAT

Gene: VIBHAR_02672: Thiosulfate reduction response regulator protein PhsR, LuxR family
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1202: Thiosulfate reduction response regulator protein PhsR, LuxR family
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Thiosulfate reduction response regulator protein PhsR, LuxR family
 
CRON 2.
sirA
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
*
Vibrio fischeri ES114

Site:
position = -224
score = 7.49854
sequence = ATTATTGTGGTTTACCACAATAGT

Gene: VF_A0101: Predicted sulfide reductase, catalytic and NADH- and FAD-binding subunit
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -215
score = 7.28224
sequence = ATTATTGTGGGAAACCACAATATC

Gene: VIBHAR_02674: Predicted sulfide reductase, catalytic and NADH- and FAD-binding subunit
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -215
score = 7.28224
sequence = ATTATTGTGGGAAACCACAATACC

Gene: VP1200: Predicted sulfide reductase, catalytic and NADH- and FAD-binding subunit
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Predicted sulfide reductase, catalytic and NADH- and FAD-binding subunit
sirC
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114

Gene: VF_A0100: Predicted sulfide reductase, anchor subunit
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1199: Predicted sulfide reductase, anchor subunit
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Predicted sulfide reductase, anchor subunit
sirB
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114

Gene: VF_A0099: Predicted sulfide reductase, FeS cluster subunit
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02676: Predicted sulfide reductase, FeS cluster subunit
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1198: Predicted sulfide reductase, FeS cluster subunit
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Predicted sulfide reductase, FeS cluster subunit
yceA
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114

Gene: VF_A0098: Predicted thiosulfate sulfurtransferase
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_02677: Predicted thiosulfate sulfurtransferase
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP1197: Predicted thiosulfate sulfurtransferase
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Predicted thiosulfate sulfurtransferase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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