Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Vibrio salmonicida LFI1238

Properties
Regulator type: Transcription factor
TF locus tag: VSAL_I0829
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 20
- Operons 14
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -80
Score: 5.4
Sequence: CTTATTTTTAGTCGAAAAAAATA
Locus tag: VSAL_I0103
Name: null
Funciton: Putative BglB-family transcriptional antiterminator
VSAL_I0103
Putative BglB-family transcriptional antiterminator
Position: -132
Score: 5.2
Sequence: CTTTTTTTTCATCAAAAATATAA
Locus tag: VSAL_I0841
Name: gltA
Funciton: Citrate synthase (si) (EC 2.3.3.1)
VSAL_I0841
gltA
Citrate synthase (si) (EC 2.3.3.1)
Position: -342
Score: 5
Sequence: CCTTTTTTGTTATAAAAATTAAG
Position: -145
Score: 4.7
Sequence: TTAATTTTGCAGAGCGAATTAAT
Locus tag: VSAL_I2182
Name: ompC
Funciton: Predicted OmpC-like chitoporin
VSAL_I2182
ompC
Predicted OmpC-like chitoporin
Position: -283
Score: 5.1
Sequence: CTTTTTTTTATATGTAAATTTAG
Locus tag: VSAL_I1132
Name: null
Funciton: Outer membrane protein
VSAL_I1132
Outer membrane protein
Position: -124
Score: 4.7
Sequence: GTTATTTTTTGATTTTAAACAAT
Locus tag: VSAL_I1849
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VSAL_I1848
Name: aldE
Funciton: Aldose 1-epimerase
VSAL_I1849
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VSAL_I1848
aldE
Aldose 1-epimerase
Position: -160
Score: 5
Sequence: GTTAATTTACAGCGCAAATAAAC
Locus tag: VSAL_II0721
Name: nagE2
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VSAL_II0721
nagE2
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -135
Score: 4.6
Sequence: ATTGATTTGGAGCAAAAAATAAA
Locus tag: VSAL_I2515
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VSAL_I2514
Name: eno
Funciton: Enolase (EC 4.2.1.11)
VSAL_I2515
pyrG
CTP synthase (EC 6.3.4.2)
VSAL_I2514
eno
Enolase (EC 4.2.1.11)
Position: -217
Score: 5.5
Sequence: TTTATTTTTAGGTGTAAAATAAT
Locus tag: VSAL_I2357
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VSAL_I2358
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VSAL_I2359
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VSAL_I2357
ptsH
Phosphocarrier protein of PTS system
VSAL_I2358
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VSAL_I2359
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -104
Score: 5.2
Sequence: GTTAATTTTTACTTAGAAATAAC
Locus tag: VSAL_I1982
Name: tfoX
Funciton: DNA transformation protein TfoX
VSAL_I1982
tfoX
DNA transformation protein TfoX
Position: -64
Score: 5.4
Sequence: CTTATTTTACAATGCGAATTAAC
Locus tag: VSAL_I2812
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
VSAL_I2812
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Position: -297
Score: 4.5
Sequence: TTAATTTCGCCCCGCAAATTAAA
Position: -41
Score: 4.8
Sequence: TTTTTTTTGTATACTAAATTATA
Locus tag: VSAL_I0830
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VSAL_I0829
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
VSAL_I0830
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
VSAL_I0829
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Position: -126
Score: 5.1
Sequence: ATTAATTTTCACCTTGAAAAAAG
Locus tag: VSAL_I0556
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: VSAL_I0557
Name: fbaA
Funciton: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
VSAL_I0556
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
VSAL_I0557
fbaA
Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Position: -127
Score: 4.5
Sequence: TTTAATTTGCGGGGCGAAATTAA
Position: -86
Score: 3.6
Sequence: TTAATAACGAGTAGCGAAATAAG
Locus tag: VSAL_I0831
Name: nagE2
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VSAL_I0831
nagE2
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -202
Score: 4.1
Sequence: TTTTTTTTGATTGCCAAATTTAA
Position: -137
Score: 4.9
Sequence: TTTAATTTATACCGTGAATTATT
Locus tag: VSAL_II0050
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
VSAL_II0050
hex
Beta-hexosaminidase (EC 3.2.1.52)
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