Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type: Transcription factor
TF locus tag: VP0833
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Vibrionales
Statistics of regulated genes:
- Genes 91
- Operons 40
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 447 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 5.5
Sequence: TAATTGTAATTATTATCATTT
Locus tag: VPA1434
Name: null
Funciton: putative hemolysin secretion ATP-binding protein
VPA1434
putative hemolysin secretion ATP-binding protein
Position: -109
Score: 5.6
Sequence: AAATAAGATCAATTATCAATT
Locus tag: VPA0427
Name: hutW
Funciton: Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
Locus tag: VPA0428
Name: huvX
Funciton: Putative heme iron utilization protein
Locus tag: VPA0429
Name: hutZ
Funciton: Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
VPA0427
hutW
Radical SAM family protein HutW, similar to coproporphyrinogen III oxidase, oxygen-independent, associated with heme uptake
VPA0428
huvX
Putative heme iron utilization protein
VPA0429
hutZ
Pyridoxamine 5'-phosphate oxidase-related putative heme iron utilization protein # hutZ
Position: -58
Score: 5.1
Sequence: TAATGAGAAGTATTATCGATA
Locus tag: VP2647
Name: VC0426
Funciton: Predicted membrane protein
VP2647
VC0426
Predicted membrane protein
Position: -2
Score: 5.6
Sequence: AATTGATATTCATTATCATCT
Locus tag: VP2944
Name: COG3315
Funciton: O-Methyltransferase involved in polyketide biosynthesis
VP2944
COG3315
O-Methyltransferase involved in polyketide biosynthesis
Position: -59
Score: 4.9
Sequence: CAATAAGAATGATTATCACCT
Locus tag: VPA0157
Name: PF03929
Funciton: Uncharacterized protein involved in iron uptake
Locus tag: VPA0158
Name: PF10029
Funciton: Predicted periplasmic protein (DUF2271)
Locus tag: VPA0159
Name: cbiM
Funciton: ABC-type Co2+ transport system, periplasmic component
Locus tag: VPA0160
Name: VIBHAR_06747
Funciton: conserved hypothetical protein
Locus tag: VPA0161
Name: VIBHAR_06746
Funciton: conserved hypothetical protein
Locus tag: VPA0162
Name: PF01297
Funciton: ABC transporter, metal-binding lipoprotein
Locus tag: VPA0163
Name: COG1121
Funciton: ABC-type Mn/Zn transport systems, ATPase component
Locus tag: VPA0164
Name: COG1108
Funciton: ABC-type Mn2+/Zn2+ transport systems, permease components
Locus tag: VPA0165
Name: COG0803
Funciton: ABC-type metal ion transport system, periplasmic component/surface adhesin
VPA0157
PF03929
Uncharacterized protein involved in iron uptake
VPA0158
PF10029
Predicted periplasmic protein (DUF2271)
VPA0159
cbiM
ABC-type Co2+ transport system, periplasmic component
VPA0160
VIBHAR_06747
conserved hypothetical protein
VPA0161
VIBHAR_06746
conserved hypothetical protein
VPA0162
PF01297
ABC transporter, metal-binding lipoprotein
VPA0163
COG1121
ABC-type Mn/Zn transport systems, ATPase component
VPA0164
COG1108
ABC-type Mn2+/Zn2+ transport systems, permease components
VPA0165
COG0803
ABC-type metal ion transport system, periplasmic component/surface adhesin
Position: -204
Score: 5.9
Sequence: AATTGATAATGATTTTCATTA
Locus tag: VP2146
Name: PF00106
Funciton: Short chain dehydrogenase
VP2146
PF00106
Short chain dehydrogenase
Position: -58
Score: 5
Sequence: AGTTGATAATGACTTTCATTA
Locus tag: VP2860
Name: sodA
Funciton: Manganese superoxide dismutase (EC 1.15.1.1)
VP2860
sodA
Manganese superoxide dismutase (EC 1.15.1.1)
Position: -57
Score: 5.3
Sequence: ACTTGATAATAATTATCGTTT
Locus tag: VP2110
Name: PF10952
Funciton: Protein of unknown function (DUF2753)
VP2110
PF10952
Protein of unknown function (DUF2753)
Position: -216
Score: 4.4
Sequence: TAATAAGTAAAGTTATCAGTA
Locus tag: VPA0666
Name: VCA0743
Funciton: uroporphyrinogen decarboxylase
VPA0666
VCA0743
uroporphyrinogen decarboxylase
Position: -33
Score: 6
Sequence: AAATAATAATCATTATCAATT
Locus tag: VP2602
Name: irgA
Funciton: TonB-dependent receptor; Enterobactin receptor IrgA
VP2602
irgA
TonB-dependent receptor; Enterobactin receptor IrgA
Position: -252
Score: 5
Sequence: TAATGTAAATGGTTCTCAATT
Locus tag: VPA0536
Name: VV20568
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: VPA0537
Name: VV20567
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: VPA0538
Name: VV20566
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: VPA0539
Name: VV20565
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
VPA0536
VV20568
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
VPA0537
VV20567
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
VPA0538
VV20566
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
VPA0539
VV20565
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -74
Score: 5.6
Sequence: AATTGATAATTGATCTTATTT
Locus tag: VPA0426
Name: tonB-hmu
Funciton: Periplasmic protein TonB involved in hemin uptake
Locus tag: VPA0425
Name: exbB-hmu
Funciton: TonB system transport protein ExbB involved in hemin uptake
Locus tag: VPA0424
Name: exbD-hmu
Funciton: TonB system transport protein ExbD involved in hemin uptake
Locus tag: VPA0423
Name: hmuT
Funciton: Hemin ABC transporter, periplasmic hemin-binding protein
Locus tag: VPA0422
Name: hmuU
Funciton: Hemin ABC transporter, permease component
Locus tag: VPA0421
Name: hmuV
Funciton: Hemin ABC transporter, ATP-binding subunit
VPA0426
tonB-hmu
Periplasmic protein TonB involved in hemin uptake
VPA0425
exbB-hmu
TonB system transport protein ExbB involved in hemin uptake
VPA0424
exbD-hmu
TonB system transport protein ExbD involved in hemin uptake
VPA0423
hmuT
Hemin ABC transporter, periplasmic hemin-binding protein
VPA0422
hmuU
Hemin ABC transporter, permease component
VPA0421
hmuV
Hemin ABC transporter, ATP-binding subunit
Position: -62
Score: 5.5
Sequence: TATTGCGAATAAATCTCATTT
Position: -36
Score: 6
Sequence: TAATGATAATTATTACCATTT
Position: -30
Score: 4.5
Sequence: TAATTATTACCATTTGCATTT
Locus tag: VP1164
Name: PF11449
Funciton: Predicted manganese transporter, 11 TMS
VP1164
PF11449
Predicted manganese transporter, 11 TMS
Position: -86
Score: 4.7
Sequence: AAATGATAATGATAGTAATTA
Position: -80
Score: 5.7
Sequence: TAATGATAGTAATTATTATTT
Position: -64
Score: 4.4
Sequence: TATTTAGATCCATTAACATTT
Locus tag: VPA0882
Name: null
Funciton: TonB-dependent heme and hemoglobin receptor HutA ; TonB-dependent hemin , ferrichrome receptor
VPA0882
TonB-dependent heme and hemoglobin receptor HutA ; TonB-dependent hemin , ferrichrome receptor
Position: -42
Score: 5.8
Sequence: AAATAATAATATTTATCATTA
Position: -36
Score: 4.4
Sequence: TAATATTTATCATTAGCAATA
Locus tag: VP0857
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: VP0858
Name: feoB
Funciton: Ferrous iron transport protein B
Locus tag: VP0859
Name: feoC
Funciton: Ferrous iron transport protein C
VP0857
feoA
Ferrous iron transport protein A
VP0858
feoB
Ferrous iron transport protein B
VP0859
feoC
Ferrous iron transport protein C
Position: -57
Score: 5.5
Sequence: AAATGATAATAATTACAATTA
Locus tag: VPA1435
Name: fhuA
Funciton: TonB-dependent outer membrane receptor for iron siderophores
Locus tag: VPA1436
Name: fhuC
Funciton: Ferrichrome transport ATP-binding protein FhuC
Locus tag: VPA1437
Name: fhuD
Funciton: Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
Locus tag: VPA1438
Name: fhuB
Funciton: Ferrichrome transport system permease protein FhuB
VPA1435
fhuA
TonB-dependent outer membrane receptor for iron siderophores
VPA1436
fhuC
Ferrichrome transport ATP-binding protein FhuC
VPA1437
fhuD
Ferrichrome-binding periplasmic protein precursor (TC 3.A.1.14.3)
VPA1438
fhuB
Ferrichrome transport system permease protein FhuB
Position: -60
Score: 5.5
Sequence: AAATAATATTTGTTCTTATTT
Locus tag: VPA1657
Name: fepA
Funciton: TonB-dependent ferric achromobactin receptor
VPA1657
fepA
TonB-dependent ferric achromobactin receptor
Position: -40
Score: 5.3
Sequence: AACTGATAAACGTTATCATTA
Locus tag: VP2491
Name: fbpA
Funciton: Ferric iron ABC transporter, iron-binding protein
Locus tag: VP2490
Name: fbpB
Funciton: Ferric iron ABC transporter, permease protein
Locus tag: VP2489
Name: fbpC
Funciton: Ferric iron ABC transporter, ATP-binding protein
VP2491
fbpA
Ferric iron ABC transporter, iron-binding protein
VP2490
fbpB
Ferric iron ABC transporter, permease protein
VP2489
fbpC
Ferric iron ABC transporter, ATP-binding protein
Position: -185
Score: 4.5
Sequence: AAATGCAAATGGTAATAATTA
Position: -179
Score: 6
Sequence: AAATGGTAATAATTATCATTA
Position: -153
Score: 5.5
Sequence: AAATGAGATTTATTCGCAATA
Locus tag: VP1165
Name: ppaC
Funciton: Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
VP1165
ppaC
Manganese-dependent inorganic pyrophosphatase (EC 3.6.1.1)
Position: -79
Score: 5.9
Sequence: AAATGATAATTGATCTCATTT
Locus tag: VPA1467
Name: ptrB
Funciton: Protease II (EC 3.4.21.83)
Locus tag: VPA1466
Name: hutR
Funciton: TonB-dependent heme receptor HutR
Locus tag: VPA1465
Name: VCA0065
Funciton: Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
Locus tag: VPA1464
Name: VCA0066
Funciton: Hypothetical protein in cluster with HutR, VCA0066 homolog
Locus tag: VPA1463
Name: VCA0067
Funciton: Hypothetical protein in cluster with HutR, VCA0067 homolog
VPA1467
ptrB
Protease II (EC 3.4.21.83)
VPA1466
hutR
TonB-dependent heme receptor HutR
VPA1465
VCA0065
Hypothetical with regulatory P domain of a subtilisin-like proprotein convertase
VPA1464
VCA0066
Hypothetical protein in cluster with HutR, VCA0066 homolog
VPA1463
VCA0067
Hypothetical protein in cluster with HutR, VCA0067 homolog
Position: -140
Score: 5.2
Sequence: AAATAAGAATTGATGTCATTT
Position: -70
Score: 5.3
Sequence: AGTTGAGAACAGTTATCAATT
Locus tag: VP1928
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: VP1927
Name: nfrC
Funciton: Putative nitrite reductase, Fe-S protein (NrfC)
Locus tag: VP1926
Name: nrfD
Funciton: Putative nitrate reductase, formate dependent (NrfD)
VP1928
nrfB
Cytochrome c-type protein NrfB precursor
VP1927
nfrC
Putative nitrite reductase, Fe-S protein (NrfC)
VP1926
nrfD
Putative nitrate reductase, formate dependent (NrfD)
Position: -98
Score: 5.3
Sequence: AAATGGTAATACTTATCACTT
Locus tag: VPA0150
Name: fhuE
Funciton: Putative ferrichrome-iron receptor
Locus tag: VPA0151
Name: PF11932
Funciton: hypothetical protein
Locus tag: VPA0152
Name: exbB1
Funciton: Biopolymer transport protein ExbB-related protein
Locus tag: VPA0153
Name: exbB2
Funciton: TonB system transport protein ExbB2
Locus tag: VPA0154
Name: exbD2
Funciton: TonB system transport protein ExbD2
Locus tag: VPA0155
Name: tonB
Funciton: Periplasmic protein TonB
Locus tag: VPA0156
Name: VC1543
Funciton: TPR domain protein, putative component of TonB system
VPA0150
fhuE
Putative ferrichrome-iron receptor
VPA0151
PF11932
hypothetical protein
VPA0152
exbB1
Biopolymer transport protein ExbB-related protein
VPA0153
exbB2
TonB system transport protein ExbB2
VPA0154
exbD2
TonB system transport protein ExbD2
VPA0155
tonB
Periplasmic protein TonB
VPA0156
VC1543
TPR domain protein, putative component of TonB system
Position: -2
Score: 5.8
Sequence: TAATGATAATAATTATCTTTT
Locus tag: VPA0004
Name: VV21178
Funciton: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Locus tag: VPA0003
Name: VV21177
Funciton: ABC-type oligopeptide transport system, ATPase component
Locus tag: VPA0002
Name: VCA0003
Funciton: Conesrved hypothetical protein
VPA0004
VV21178
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
VPA0003
VV21177
ABC-type oligopeptide transport system, ATPase component
VPA0002
VCA0003
Conesrved hypothetical protein
Position: -81
Score: 5.3
Sequence: AATTAATAATCATTCCCAATA
Locus tag: VP2332
Name: null
Funciton: conserved hypothetical protein
VP2332
conserved hypothetical protein
Position: -33
Score: 5
Sequence: GCATGATAATAGATCTCATTA
Locus tag: VPA0657
Name: vctP
Funciton: iron(III) ABC transporter, periplasmic iron-compound-binding protein
Locus tag: VPA0658
Name: vctD
Funciton: Iron(III) ABC transporter, permease protein
Locus tag: VPA0659
Name: vctB
Funciton: Iron(III) ABC transporter, permease protein
Locus tag: VPA0660
Name: vctC
Funciton: Iron(III) ABC transporter, ATP-binding protein
VPA0657
vctP
iron(III) ABC transporter, periplasmic iron-compound-binding protein
VPA0658
vctD
Iron(III) ABC transporter, permease protein
VPA0659
vctB
Iron(III) ABC transporter, permease protein
VPA0660
vctC
Iron(III) ABC transporter, ATP-binding protein
Position: -80
Score: 5.5
Sequence: TAACGAAAATCATTCTCATTT
Locus tag: VP2161
Name: COG3016
Funciton: Conserved hypothetical iron-regulated protein
VP2161
COG3016
Conserved hypothetical iron-regulated protein
Position: -66
Score: 5.6
Sequence: AACTAAGAATTATTATTATTT
Locus tag: VP0074
Name: VC0074
Funciton: conserved hypothetical protein
VP0074
VC0074
conserved hypothetical protein
Position: -33
Score: 5.5
Sequence: AAATAAGAATAATTAGCACTA
Locus tag: VP1920
Name: irpA
Funciton: Iron-regulated protein A precursor
VP1920
irpA
Iron-regulated protein A precursor
Position: -55
Score: 5.1
Sequence: TATTGATAATAAGTATCATTG
Locus tag: VPA0979
Name: iutA
Funciton: Aerobactin siderophore receptor IutA,TonB-dependent
VPA0979
iutA
Aerobactin siderophore receptor IutA,TonB-dependent
Position: -189
Score: 4.4
Sequence: AAATGTTAATGGATCTAAATA
Position: -173
Score: 5.7
Sequence: AAATAATAATTACTATCATTA
Position: -167
Score: 4.7
Sequence: TAATTACTATCATTATCATTT
Locus tag: VPA0883
Name: VCA0575
Funciton: Transcriptional regulator, LysR family
VPA0883
VCA0575
Transcriptional regulator, LysR family
Position: -24
Score: 5
Sequence: AAATAGGACTTATTCTCAATT
Locus tag: VP1609
Name: VV1_2646
Funciton: ABC-type multidrug transport system, ATPase and permease component
Locus tag: VP1610
Name: pqiA
Funciton: Paraquat-inducible protein A
Locus tag: VP1611
Name: pqiB
Funciton: Paraquat-inducible protein B
VP1609
VV1_2646
ABC-type multidrug transport system, ATPase and permease component
VP1610
pqiA
Paraquat-inducible protein A
VP1611
pqiB
Paraquat-inducible protein B
Position: -41
Score: 6.2
Sequence: AATTGATAATAATTATCATTA
Position: -38
Score: 4.5
Sequence: TGATAATAATTATCATTATCT
Locus tag: VP2872
Name: VC1572
Funciton: hypothetical protein
Locus tag: VP2873
Name: fumC
Funciton: Fumarate hydratase class II (EC 4.2.1.2)
VP2872
VC1572
hypothetical protein
VP2873
fumC
Fumarate hydratase class II (EC 4.2.1.2)
Position: -208
Score: 5.5
Sequence: AAATAAGAACAAATATTATTT
Locus tag: VPA1658
Name: VPA1658
Funciton: Vibrioferrin ligase/carboxylase protein PvsA
Locus tag: VPA1659
Name: VPA1659
Funciton: Vibrioferrin amide bond forming protein PvsB @ Siderophore synthetase superfamily, group B
Locus tag: VPA1660
Name: VPA1660
Funciton: Vibrioferrin membrane-spanning transport protein PvsC
Locus tag: VPA1661
Name: VPA1661
Funciton: Vibrioferrin amide bond forming protein PvsD @ Siderophore synthetase superfamily, group A
Locus tag: VPA1662
Name: VPA1662
Funciton: Vibrioferrin decarboxylase protein PvsE
VPA1658
VPA1658
Vibrioferrin ligase/carboxylase protein PvsA
VPA1659
VPA1659
Vibrioferrin amide bond forming protein PvsB @ Siderophore synthetase superfamily, group B
VPA1660
VPA1660
Vibrioferrin membrane-spanning transport protein PvsC
VPA1661
VPA1661
Vibrioferrin amide bond forming protein PvsD @ Siderophore synthetase superfamily, group A
VPA1662
VPA1662
Vibrioferrin decarboxylase protein PvsE
Position: -99
Score: 5
Sequence: AATTGAGAACCATTTACATTA
Locus tag: VPA0535
Name: VCA1041
Funciton: Phosphomannomutase
VPA0535
VCA1041
Phosphomannomutase
Position: -40
Score: 4.5
Sequence: TAATAATAATGATAATAATCA
Locus tag: VPA1462
Name: torS
Funciton: Methyl-accepting chemotaxis protein
VPA1462
torS
Methyl-accepting chemotaxis protein
Position: -80
Score: 4.8
Sequence: AAATGAAAACAATACGCACTT
Position: -57
Score: 5.7
Sequence: AATTGATAATCAATTTCATTT
Locus tag: VPA1494
Name: VV20793
Funciton: Conserved hypothetical protein
Locus tag: VPA1495
Name: VV20794
Funciton: ABC transporter, ATP-binding protein
VPA1494
VV20793
Conserved hypothetical protein
VPA1495
VV20794
ABC transporter, ATP-binding protein
Position: -2
Score: 5.4
Sequence: TAATGATAATAATTCTCAGGT
Locus tag: VPA0663
Name: null
Funciton: putative transcriptional regulator, AraC/XylS family
VPA0663
putative transcriptional regulator, AraC/XylS family
Position: -124
Score: 6
Sequence: AATTGATAATGATTATTATTT
Locus tag: VP2603
Name: irgB
Funciton: Iron-regulated virulence regulatory protein irgB
VP2603
irgB
Iron-regulated virulence regulatory protein irgB
Position: -59
Score: 4.4
Sequence: TAACAAGAACCATTCCCGTTT
Locus tag: VP2769
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: VP2768
Name: bfr
Funciton: Bacterioferritin
VP2769
bfd
Bacterioferritin-associated ferredoxin
VP2768
bfr
Bacterioferritin
Position: -242
Score: 4.8
Sequence: AGATAATATTTATTCTGATTA
Position: -42
Score: 5.8
Sequence: AAATAATAATATTTATCATTA
Locus tag: VP0857
Name: feoA
Funciton: Ferrous iron transport protein A
VP0857
feoA
Ferrous iron transport protein A
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