Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FadR in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_02929
Regulator family: GntR/Others
Regulation mode: repressor (activator)
Biological process: Fatty acid degradation
Effector: Palmitoyl-CoA; Oleoyl-CoA
Regulog: FadR - Vibrionales
Statistics of regulated genes:
- Genes 10
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 77 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -85
Score: 4.2
Sequence: AACTGGTTTGTCTAGTA
Position: -70
Score: 3.4
Sequence: TACTGATCGGAGTTGTT
Locus tag: VIBHAR_02332
Name: fabA
Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
fabA
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)

Position: -34
Score: 5.7
Sequence: ATCAGGTCAGACCTCTT
Locus tag: VIBHAR_03121
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: VIBHAR_03120
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -103
Score: 3.3
Sequence: CAATGGTCGGATTTGTA
Locus tag: VIBHAR_03124
Name: fadL
Funciton: Long-chain fatty acid transport protein
fadL
Long-chain fatty acid transport protein

Position: -39
Score: 5
Sequence: CTGTGGTCAGACCACAA
Locus tag: VIBHAR_03043
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
fadH
2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)

Position: -57
Score: 4.8
Sequence: TACAGATCAGACCAGTT
Locus tag: VIBHAR_01340
Name: VC2105
Funciton: Thioesterase/thiol ester dehydrase-isomerase
VC2105
Thioesterase/thiol ester dehydrase-isomerase

Position: -67
Score: 5.6
Sequence: TACTGGTTAGACCTCTT
Locus tag: VIBHAR_03204
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)

Position: -213
Score: 4.6
Sequence: AAAAGGTTTGACCAGTT
Locus tag: VIBHAR_00269
Name: plsB
Funciton: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
plsB
Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)

Position: -126
Score: 5.1
Sequence: CACTGGTCAAACCAGAA
Locus tag: VIBHAR_00460
Name: fadB
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: VIBHAR_00459
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
fadB
Enoyl-CoA hydratase (EC 4.2.1.17)
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD