Regulon of FadR in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type:	Transcription factor
TF locus tag:	VIBHAR_02929
Regulator family:	GntR/Others
Regulation mode:	repressor (activator)
Biological process:	Fatty acid degradation
Effector:	Palmitoyl-CoA; Oleoyl-CoA
Regulog:	FadR - Vibrionales
Statistics of regulated genes:
- Genes	10
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 77 sites [see more]

Member of regulog collections

By trascription factor - FadR
By taxonomy - Vibrionales
By TF family - GntR/Others
By effector - Palmitoyl-CoA
By effector - Oleoyl-CoA
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -85 Score: 4.2 Sequence: AACTGGTTTGTCTAGTA Position: -70 Score: 3.4 Sequence: TACTGATCGGAGTTGTT Locus tag: VIBHAR_02332 Name: fabA Funciton: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
	VIBHAR_02332	fabA	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
Position: -34 Score: 5.7 Sequence: ATCAGGTCAGACCTCTT Locus tag: VIBHAR_03121 Name: fadI Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) Locus tag: VIBHAR_03120 Name: fadJ Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
	VIBHAR_03121	fadI	3-ketoacyl-CoA thiolase (EC 2.3.1.16)
	VIBHAR_03120	fadJ	Enoyl-CoA hydratase (EC 4.2.1.17)
Position: -103 Score: 3.3 Sequence: CAATGGTCGGATTTGTA Locus tag: VIBHAR_03124 Name: fadL Funciton: Long-chain fatty acid transport protein
	VIBHAR_03124	fadL	Long-chain fatty acid transport protein
Position: -39 Score: 5 Sequence: CTGTGGTCAGACCACAA Locus tag: VIBHAR_03043 Name: fadH Funciton: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
	VIBHAR_03043	fadH	2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
Position: -57 Score: 4.8 Sequence: TACAGATCAGACCAGTT Locus tag: VIBHAR_01340 Name: VC2105 Funciton: Thioesterase/thiol ester dehydrase-isomerase
	VIBHAR_01340	VC2105	Thioesterase/thiol ester dehydrase-isomerase
Position: -67 Score: 5.6 Sequence: TACTGGTTAGACCTCTT Locus tag: VIBHAR_03204 Name: fadE2 Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	VIBHAR_03204	fadE2	Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -213 Score: 4.6 Sequence: AAAAGGTTTGACCAGTT Locus tag: VIBHAR_00269 Name: plsB Funciton: Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
	VIBHAR_00269	plsB	Glycerol-3-phosphate acyltransferase (EC 2.3.1.15)
Position: -126 Score: 5.1 Sequence: CACTGGTCAAACCAGAA Locus tag: VIBHAR_00460 Name: fadB Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) Locus tag: VIBHAR_00459 Name: fadA Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
	VIBHAR_00460	fadB	Enoyl-CoA hydratase (EC 4.2.1.17)
	VIBHAR_00459	fadA	3-ketoacyl-CoA thiolase (EC 2.3.1.16)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD