Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog VP2396 - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Galactosides utilization
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633 3 2
Vibrio salmonicida LFI1238
Vibrio shilonii AK1 3 2
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
GH5
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -63
score = 6.07061
sequence = AAATTATTAATTAATATATT

Site:
position = -51
score = 6.35458
sequence = AATATATTAGCTAATATTAT

Site:
position = -38
score = 5.87878
sequence = ATATTATTAGTTAATAATTT

Site:
position = -183
score = 5.02844
sequence = AAGATATTAGCTAAAGATTA

Gene: VP2395: Glycoside hydrolase, family 5
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -71
score = 5.74967
sequence = AAATTATTAGTAAATATATT

Site:
position = -46
score = 5.08585
sequence = ATATTATTAGTTAAGTTATT

Site:
position = -59
score = 6.35458
sequence = AATATATTAGCTAATATTAT

Gene: VSAK1_10703: Glycoside hydrolase, family 5
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Glycoside hydrolase, family 5
VP2394
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP2394: Lactose and galactose permease, GPH translocator family
 
Vibrio salmonicida LFI1238
 
Vibrio shilonii AK1

Gene: VSAK1_10698: Lactose and galactose permease, GPH translocator family
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Lactose and galactose permease, GPH translocator family
 
CRON 2.
VP2396
 
Photobacterium profundum SS9
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -169
score = 6.07061
sequence = AATATATTAATTAATAATTT

Site:
position = -49
score = 5.02844
sequence = TAATCTTTAGCTAATATCTT

Site:
position = -181
score = 6.35458
sequence = ATAATATTAGCTAATATATT

Site:
position = -194
score = 5.87878
sequence = AAATTATTAACTAATAATAT

Gene: VP2396: Transcriptional regulator, LacI family
 
Vibrio salmonicida LFI1238
*
Vibrio shilonii AK1

Site:
position = -192
score = 5.08585
sequence = AATAACTTAACTAATAATAT

Site:
position = -167
score = 5.74967
sequence = AATATATTTACTAATAATTT

Site:
position = -179
score = 6.35458
sequence = ATAATATTAGCTAATATATT

Gene: VSAK1_10708: Transcriptional regulator, LacI family
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
Transcriptional regulator, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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