Regulog L10_leader - Vibrionales
| Regulator type: | RNA regulatory element |
| Name: | L10_leader |
| RFAM: | RF00557 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Vibrionales
- By RNA motif - L10_leader
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | ||
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | ||
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | 2 | 1 |
| Vibrio fischeri ES114 | 2 | 1 |
| Vibrio salmonicida LFI1238 | 2 | 1 |
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 |
| Genes | Function | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||
| rplJ |
Gene: VC0326: LSU ribosomal protein L10p (P0) |
Gene: VV1_1209: LSU ribosomal protein L10p (P0) |
Gene: VIBHAR_00227: LSU ribosomal protein L10p (P0) |
Gene: VP2924: LSU ribosomal protein L10p (P0) |
|
*
Vibrio splendidus LGP32 Site: position = -139 score = 25.33 sequence = AGCAATTCAGGTCAT... Gene: VS_2965: LSU ribosomal protein L10p (P0) |
*
Vibrio fischeri ES114 Site: position = -288 score = 24.18 sequence = TTTAATTAGGAAGTC... Gene: VF_2416: LSU ribosomal protein L10p (P0) |
*
Vibrio salmonicida LFI1238 Site: position = -178 score = 20.51 sequence = TTTGATTAAATAGTC... Gene: VSAL_I2868: LSU ribosomal protein L10p (P0) |
Gene: VAS14_19166: LSU ribosomal protein L10p (P0) |
Gene: PBPRA3434: LSU ribosomal protein L10p (P0) |
LSU ribosomal protein L10p (P0) |
| rplL |
Gene: VC0327: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VV1_1210: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VIBHAR_00226: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VP2923: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VSAK1_09858: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VS_2964: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VF_2415: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VSAL_I2867: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: VAS14_19161: LSU ribosomal protein L7/L12 (P1/P2) |
Gene: PBPRA3433: LSU ribosomal protein L7/L12 (P1/P2) |
LSU ribosomal protein L7/L12 (P1/P2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |