Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TreR - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Trehalose utilization
Effector: Trehalose-6-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 13 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Photobacterium profundum SS9 2 1
Vibrio angustum S14
Vibrio cholerae O1 biovar eltor str. N16961 2 1
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116 2 1
Vibrio parahaemolyticus RIMD 2210633 2 1
Vibrio salmonicida LFI1238 2 1
Vibrio shilonii AK1 2 1
Vibrio splendidus LGP32 2 1
Vibrio vulnificus CMCP6 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
treB
*
Photobacterium profundum SS9

Site:
position = -78
score = 5.92472
sequence = TATTGGGAATGTTCCCATTG

Site:
position = -134
score = 6.56189
sequence = TTATGGGAATGTTCCCATTT

Gene: PBPRA1224: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
 
Vibrio angustum S14
*
Vibrio cholerae O1 biovar eltor str. N16961

Site:
position = -102
score = 6.58607
sequence = TAATGGGATTGTTCCCATTT

Gene: VC0910: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
 
Vibrio fischeri ES114
*
Vibrio harveyi ATCC BAA-1116

Site:
position = -70
score = 6.0169
sequence = AAATGGGAATGTTCCCAAAA

Site:
position = -126
score = 6.71918
sequence = TAATGGGACTGTTCCCATTT

Gene: VIBHAR_01205: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Vibrio parahaemolyticus RIMD 2210633

Site:
position = -127
score = 6.71918
sequence = TAATGGGACTGTTCCCATTT

Site:
position = -71
score = 6.96316
sequence = AAATGGGAATGTTCCCATTT

Gene: VP0710: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Vibrio salmonicida LFI1238

Site:
position = -52
score = 6.56189
sequence = AAATGGGAACATTCCCATCA

Gene: VSAL_II0577: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Vibrio shilonii AK1

Site:
position = -159
score = 6.92481
sequence = TAATGGGAATGTTCCCATTT

Gene: VSAK1_10523: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Vibrio splendidus LGP32

Site:
position = -122
score = 6.71918
sequence = TAATGGGACTGTTCCCATTT

Site:
position = -67
score = 6.37982
sequence = AATTGGGAATGTTCCCATTA

Gene: VS_2378: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
*
Vibrio vulnificus CMCP6

Site:
position = -120
score = 6.71918
sequence = TAATGGGACTGTTCCCATTT

Site:
position = -65
score = 6.46971
sequence = GAATGGGAATGTTCCCATTA

Gene: VV1_0289: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
treC
 
Photobacterium profundum SS9

Gene: PBPRA1225: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961

Gene: VC0911: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116

Gene: VIBHAR_01206: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio parahaemolyticus RIMD 2210633

Gene: VP0711: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio salmonicida LFI1238

Gene: VSAL_II0578: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio shilonii AK1

Gene: VSAK1_10518: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio splendidus LGP32

Gene: VS_2377: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
 
Vibrio vulnificus CMCP6

Gene: VV1_0288: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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