Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog VSAL_I1306 - Vibrionales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Vibrio angustum S14 2 2
Vibrio cholerae O1 biovar eltor str. N16961
Vibrio fischeri ES114
Vibrio harveyi ATCC BAA-1116
Vibrio parahaemolyticus RIMD 2210633
Vibrio salmonicida LFI1238 4 2
Vibrio shilonii AK1
Vibrio splendidus LGP32
Vibrio vulnificus CMCP6
Photobacterium profundum SS9
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
VSAL_I1305
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
*
Vibrio salmonicida LFI1238

Site:
position = -71
score = 5.36833
sequence = ATTGACATATGTCACT

Gene: VSAL_I1305: hypothetical protein
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
 
Photobacterium profundum SS9
hypothetical protein
COG2084
*
Vibrio angustum S14

Site:
position = -43
score = 5.10587
sequence = AATGACATAACTCAAT

Site:
position = -221
score = 5.96888
sequence = ATTGACATATGTCAAT

Gene: VAS14_03183: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1304: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
 
Photobacterium profundum SS9
3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases
COG0730
 
Vibrio angustum S14
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
 
Vibrio salmonicida LFI1238

Gene: VSAL_I1303: membrane protein
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
 
Photobacterium profundum SS9
membrane protein
 
CRON 2.
VSAL_I1306
*
Vibrio angustum S14

Site:
position = -279
score = 5.10587
sequence = ATTGAGTTATGTCATT

Site:
position = -101
score = 5.96888
sequence = ATTGACATATGTCAAT

Gene: VAS14_03178: Transcriptional regulator, GntR family
 
Vibrio cholerae O1 biovar eltor str. N16961
 
Vibrio fischeri ES114
 
Vibrio harveyi ATCC BAA-1116
 
Vibrio parahaemolyticus RIMD 2210633
*
Vibrio salmonicida LFI1238

Site:
position = -105
score = 5.36833
sequence = AGTGACATATGTCAAT

Gene: VSAL_I1306: Transcriptional regulator, GntR family
 
Vibrio shilonii AK1
 
Vibrio splendidus LGP32
 
Vibrio vulnificus CMCP6
 
Photobacterium profundum SS9
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD