Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NagC in Vibrio cholerae O1 biovar eltor str. N16961

Properties
Regulator type: Transcription factor
TF locus tag: VC0993
Regulator family: ROK
Regulation mode: repressor (activator)
Biological process: N-acetylglucosamine utilization
Effector: N-acetylglucosamine-6-phosphate
Regulog: NagC - Vibrionales
Statistics of regulated genes:
- Genes 27
- Operons 20
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 199 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -135
Score: 4.7
Sequence: CTTATTTCTCTTCGTAAACTATC
Locus tag: VC1153
Name: tfoX1
Funciton: DNA transformation protein TfoX1 (Sxy)
VC1153
tfoX1
DNA transformation protein TfoX1 (Sxy)
Position: -39
Score: 4.7
Sequence: GTTATCTTTAATCAGAAATTAAG
Locus tag: VC2000
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VC2001
Name: aldE
Funciton: Aldose 1-epimerase
VC2000
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VC2001
aldE
Aldose 1-epimerase
Position: -215
Score: 5.3
Sequence: TATTTTTTATTATTTAAAATAAA
Locus tag: VC2361
Name: grcA
Funciton: autonomous glycyl radical cofactor GrcA
VC2361
grcA
autonomous glycyl radical cofactor GrcA
Position: -98
Score: 5.2
Sequence: TATATTTTCTATATCAAAATAAA
Locus tag: VC1589
Name: aldC
Funciton: Alpha-acetolactate decarboxylase (EC 4.1.1.5)
Locus tag: VC1590
Name: budB
Funciton: Acetolactate synthase, catabolic (EC 2.2.1.6)
Locus tag: VC1591
Name: VC1591
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family
VC1589
aldC
Alpha-acetolactate decarboxylase (EC 4.1.1.5)
VC1590
budB
Acetolactate synthase, catabolic (EC 2.2.1.6)
VC1591
VC1591
Oxidoreductase, short-chain dehydrogenase/reductase family
Position: -357
Score: 5.2
Sequence: TTTTATTTATGATCAAAAATAAA
Locus tag: VC1073
Name: chiD
Funciton: Chitodextrinase precursor (EC 3.2.1.14)
VC1073
chiD
Chitodextrinase precursor (EC 3.2.1.14)
Position: -130
Score: 5
Sequence: TTAATTTTGCGCTTAGAAAAAAG
Locus tag: VC2217
Name: hex
Funciton: Beta-hexosaminidase (EC 3.2.1.52)
VC2217
hex
Beta-hexosaminidase (EC 3.2.1.52)
Position: -200
Score: 5.6
Sequence: GTTTTTTTACATCATAAAATAAG
Position: -106
Score: 5
Sequence: TTTAATTTGCGGAGCAAAATTAA
Locus tag: VC0995
Name: nagE1
Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
VC0995
nagE1
PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -248
Score: 5.1
Sequence: GTAATTTTGTTACTAAAAATAAC
Position: -214
Score: 4.6
Sequence: TTTTATTTACCCAGTAAAATTAA
Locus tag: VC2013
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VC2013
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -131
Score: 5.1
Sequence: TTTGATTTGAAGCAAAAAATAAA
Locus tag: VC2448
Name: pyrG
Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VC2447
Name: eno
Funciton: Enolase (EC 4.2.1.11)
VC2448
pyrG
CTP synthase (EC 6.3.4.2)
VC2447
eno
Enolase (EC 4.2.1.11)
Position: -291
Score: 5.6
Sequence: CTTATTTTATGATGTAAAAAAAC
Locus tag: VC0994
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VC0993
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
VC0994
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
VC0993
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Position: -144
Score: 4.9
Sequence: TTTATTTCGAGGCAAAAATTTAA
Position: -102
Score: 4.7
Sequence: CTTACTTCGTATCAATAAATAAG
Locus tag: VC0449
Name: mcp
Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein
VC0449
mcp
N-acetylglucosamine regulated methyl-accepting chemotaxis protein
Position: -319
Score: 5.1
Sequence: GTTATTTAACTCTAAAAAATAAG
Locus tag: VCA0811
Name: cbp
Funciton: Chitin binding protein
VCA0811
cbp
Chitin binding protein
Position: -223
Score: 4.9
Sequence: ATTAATTTTTATCAGGAAAAATG
Locus tag: VC1722
Name: tfoX
Funciton: DNA transformation protein TfoX
VC1722
tfoX
DNA transformation protein TfoX
Position: -58
Score: 5.1
Sequence: CTTATTTTTCACTATTAAATTAG
Locus tag: VC0769
Name: chi
Funciton: Chitinase (EC 3.2.1.14)
VC0769
chi
Chitinase (EC 3.2.1.14)
Position: -227
Score: 5.1
Sequence: CTTTTTTTATGGTGAAAAATTTA
Position: -42
Score: 4.5
Sequence: TTTATTTAATGGTTGAAATAATA
Locus tag: VCA0700
Name: chiD
Funciton: Chitodextrinase precursor (EC 3.2.1.14)
VCA0700
chiD
Chitodextrinase precursor (EC 3.2.1.14)
Position: -30
Score: 5.2
Sequence: TTTATTTTGATATAGAAAATATA
Locus tag: VC1588
Name: alsR
Funciton: Transcriptional regulator of alpha-acetolactate operon alsR
VC1588
alsR
Transcriptional regulator of alpha-acetolactate operon alsR
Position: -207
Score: 5.5
Sequence: TTTATTTTTAGCTTCAAAATAAA
Locus tag: VC0966
Name: ptsH
Funciton: Phosphocarrier protein of PTS system
Locus tag: VC0965
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VC0964
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
VC0966
ptsH
Phosphocarrier protein of PTS system
VC0965
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
VC0964
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -197
Score: 5.4
Sequence: TATTTTTTTAGATAAAAATTAAG
Locus tag: VC0972
Name: chiP
Funciton: Outer membrane chitoporin
VC0972
chiP
Outer membrane chitoporin
Position: -120
Score: 4.8
Sequence: ATTTTTTTTCGCAAACAAAAAAG
Locus tag: VCA0027
Name: chiA
Funciton: Chitinase (EC 3.2.1.14)
VCA0027
chiA
Chitinase (EC 3.2.1.14)
Position: -109
Score: 5.6
Sequence: CTTATTTTATAATGCAAATTAAC
Locus tag: VCA1025
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
VCA1025
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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