Regulon of NagC in Vibrio cholerae O1 biovar eltor str. N16961
| Regulator type: | Transcription factor |
| TF locus tag: | VC0993 |
| Regulator family: | ROK |
| Regulation mode: | repressor (activator) |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine-6-phosphate |
| Regulog: | NagC - Vibrionales |
| Statistics of regulated genes: | |
| - Genes | 27 |
| - Operons | 20 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NagC
- By taxonomy - Vibrionales
- By TF family - ROK
- By effector - N-acetylglucosamine-6-phosphate
- By pathway - N-acetylglucosamine utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -135
Score: 4.7 Sequence: CTTATTTCTCTTCGTAAACTATC
Locus tag: VC1153
Name: tfoX1 Funciton: DNA transformation protein TfoX1 (Sxy) |
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tfoX1
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DNA transformation protein TfoX1 (Sxy)
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Position: -39
Score: 4.7 Sequence: GTTATCTTTAATCAGAAATTAAG
Locus tag: VC2000
Name: gapA Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: VC2001
Name: aldE Funciton: Aldose 1-epimerase |
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gapA
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NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
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aldE
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Aldose 1-epimerase
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Position: -215
Score: 5.3 Sequence: TATTTTTTATTATTTAAAATAAA
Locus tag: VC2361
Name: grcA Funciton: autonomous glycyl radical cofactor GrcA |
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grcA
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autonomous glycyl radical cofactor GrcA
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Position: -98
Score: 5.2 Sequence: TATATTTTCTATATCAAAATAAA
Locus tag: VC1589
Name: aldC Funciton: Alpha-acetolactate decarboxylase (EC 4.1.1.5)
Locus tag: VC1590
Name: budB Funciton: Acetolactate synthase, catabolic (EC 2.2.1.6)
Locus tag: VC1591
Name: VC1591 Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family |
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aldC
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Alpha-acetolactate decarboxylase (EC 4.1.1.5)
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budB
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Acetolactate synthase, catabolic (EC 2.2.1.6)
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VC1591
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Oxidoreductase, short-chain dehydrogenase/reductase family
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Position: -357
Score: 5.2 Sequence: TTTTATTTATGATCAAAAATAAA
Locus tag: VC1073
Name: chiD Funciton: Chitodextrinase precursor (EC 3.2.1.14) |
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chiD
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Chitodextrinase precursor (EC 3.2.1.14)
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Position: -130
Score: 5 Sequence: TTAATTTTGCGCTTAGAAAAAAG
Locus tag: VC2217
Name: hex Funciton: Beta-hexosaminidase (EC 3.2.1.52) |
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hex
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Beta-hexosaminidase (EC 3.2.1.52)
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Position: -200
Score: 5.6 Sequence: GTTTTTTTACATCATAAAATAAG
Position: -106
Score: 5 Sequence: TTTAATTTGCGGAGCAAAATTAA
Locus tag: VC0995
Name: nagE1 Funciton: PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
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nagE1
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PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
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Position: -248
Score: 5.1 Sequence: GTAATTTTGTTACTAAAAATAAC
Position: -214
Score: 4.6 Sequence: TTTTATTTACCCAGTAAAATTAA
Locus tag: VC2013
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
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ptsG
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PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
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Position: -131
Score: 5.1 Sequence: TTTGATTTGAAGCAAAAAATAAA
Locus tag: VC2448
Name: pyrG Funciton: CTP synthase (EC 6.3.4.2)
Locus tag: VC2447
Name: eno Funciton: Enolase (EC 4.2.1.11) |
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pyrG
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CTP synthase (EC 6.3.4.2)
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eno
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Enolase (EC 4.2.1.11)
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Position: -291
Score: 5.6 Sequence: CTTATTTTATGATGTAAAAAAAC
Locus tag: VC0994
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: VC0993
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
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nagA
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N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
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nagC
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N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
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Position: -144
Score: 4.9 Sequence: TTTATTTCGAGGCAAAAATTTAA
Position: -102
Score: 4.7 Sequence: CTTACTTCGTATCAATAAATAAG
Locus tag: VC0449
Name: mcp Funciton: N-acetylglucosamine regulated methyl-accepting chemotaxis protein |
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mcp
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N-acetylglucosamine regulated methyl-accepting chemotaxis protein
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Position: -319
Score: 5.1 Sequence: GTTATTTAACTCTAAAAAATAAG
Locus tag: VCA0811
Name: cbp Funciton: Chitin binding protein |
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cbp
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Chitin binding protein
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Position: -223
Score: 4.9 Sequence: ATTAATTTTTATCAGGAAAAATG
Locus tag: VC1722
Name: tfoX Funciton: DNA transformation protein TfoX |
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tfoX
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DNA transformation protein TfoX
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Position: -58
Score: 5.1 Sequence: CTTATTTTTCACTATTAAATTAG
Locus tag: VC0769
Name: chi Funciton: Chitinase (EC 3.2.1.14) |
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chi
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Chitinase (EC 3.2.1.14)
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Position: -227
Score: 5.1 Sequence: CTTTTTTTATGGTGAAAAATTTA
Position: -42
Score: 4.5 Sequence: TTTATTTAATGGTTGAAATAATA
Locus tag: VCA0700
Name: chiD Funciton: Chitodextrinase precursor (EC 3.2.1.14) |
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chiD
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Chitodextrinase precursor (EC 3.2.1.14)
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Position: -30
Score: 5.2 Sequence: TTTATTTTGATATAGAAAATATA
Locus tag: VC1588
Name: alsR Funciton: Transcriptional regulator of alpha-acetolactate operon alsR |
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alsR
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Transcriptional regulator of alpha-acetolactate operon alsR
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Position: -207
Score: 5.5 Sequence: TTTATTTTTAGCTTCAAAATAAA
Locus tag: VC0966
Name: ptsH Funciton: Phosphocarrier protein of PTS system
Locus tag: VC0965
Name: ptsI Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: VC0964
Name: crr Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69) |
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ptsH
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Phosphocarrier protein of PTS system
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ptsI
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Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
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crr
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PTS system, glucose-specific IIA component (EC 2.7.1.69)
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Position: -197
Score: 5.4 Sequence: TATTTTTTTAGATAAAAATTAAG
Locus tag: VC0972
Name: chiP Funciton: Outer membrane chitoporin |
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chiP
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Outer membrane chitoporin
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Position: -120
Score: 4.8 Sequence: ATTTTTTTTCGCAAACAAAAAAG
Locus tag: VCA0027
Name: chiA Funciton: Chitinase (EC 3.2.1.14) |
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chiA
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Chitinase (EC 3.2.1.14)
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Position: -109
Score: 5.6 Sequence: CTTATTTTATAATGCAAATTAAC
Locus tag: VCA1025
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) |
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nagB
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Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |