Regulon of HypR in Vibrio parahaemolyticus RIMD 2210633

Properties
Regulator type:	Transcription factor
TF locus tag:	VP1328
Regulator family:	GntR/Others
Regulation mode:	activator (repressor)
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	Proline; 4-hydroxyproline
Regulog:	HypR - Vibrionales
Statistics of regulated genes:
- Genes	8
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Vibrionales
By trascription factor - HypR
By TF family - GntR/Others
By effector - Proline
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -34 Score: 5 Sequence: ATTGCATACAAT Locus tag: VP1335 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	VP1335	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
Position: -104 Score: 4.9 Sequence: ATTGTATAAAAT Locus tag: VP1332 Name: COG687 (PotD) Funciton: Probable binding protein component of ABC transporter Locus tag: VP1333 Name: COG2423 Funciton: Predicted ornithine cyclodeaminase, mu-crystallin homolog
	VP1332	COG687 (PotD)	Probable binding protein component of ABC transporter
	VP1333	COG2423	Predicted ornithine cyclodeaminase, mu-crystallin homolog
Position: -78 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: VP1330 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: VP1329 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	VP1330	hypE	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	VP1329	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -36 Score: 4.8 Sequence: ATTGGATACAAT Locus tag: VP1328 Name: hypR Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family Locus tag: VP1327 Name: null Funciton: hypothetical protein
	VP1328	hypR	Predicted regulator for proline and hydrohyproline utilization, GntR family
	VP1327		hypothetical protein
Position: -44 Score: 5.3 Sequence: ATTGTATACAAT Locus tag: VP1331 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	VP1331	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD