Regulog HypR - Vibrionales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Proline and 4-hydrohyproline utilization |
| Effector: | Proline; 4-hydroxyproline |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Vibrionales
- By trascription factor - HypR
- By TF family - GntR/Others
- By effector - Proline
- By effector - 4-hydroxyproline
- By pathway - Proline and 4-hydrohyproline utilization
| Genome | Genes | Operons |
|---|---|---|
| Vibrio cholerae O1 biovar eltor str. N16961 | ||
| Vibrio vulnificus CMCP6 | ||
| Vibrio harveyi ATCC BAA-1116 | ||
| Vibrio parahaemolyticus RIMD 2210633 | 8 | 5 |
| Vibrio shilonii AK1 | ||
| Vibrio splendidus LGP32 | ||
| Vibrio fischeri ES114 | ||
| Vibrio salmonicida LFI1238 | ||
| Vibrio angustum S14 | ||
| Photobacterium profundum SS9 |
| Genes | Function | ||||||||||
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| CRON 1. | |||||||||||
| hypD |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -34 score = 5.01168 sequence = ATTGCATACAAT Gene: VP1335: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
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1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted |
| CRON 2. | |||||||||||
| COG687 (PotD) |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -104 score = 4.94466 sequence = ATTGTATAAAAT Gene: VP1332: Probable binding protein component of ABC transporter |
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Probable binding protein component of ABC transporter |
| COG2423 |
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Gene: VP1333: Predicted ornithine cyclodeaminase, mu-crystallin homolog |
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Predicted ornithine cyclodeaminase, mu-crystallin homolog |
| CRON 3. | |||||||||||
| hypE |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -78 score = 5.32149 sequence = ATTGTATACAAT Gene: VP1330: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
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Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) |
| hypH |
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Gene: VP1329: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
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Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible |
| CRON 4. | |||||||||||
| hypO |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -44 score = 5.32149 sequence = ATTGTATACAAT Gene: VP1331: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
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D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster |
| CRON 5. | |||||||||||
| hypR |
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Vibrio parahaemolyticus RIMD 2210633 Site: position = -36 score = 4.78832 sequence = ATTGGATACAAT Gene: VP1328: Predicted regulator for proline and hydrohyproline utilization, GntR family |
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Predicted regulator for proline and hydrohyproline utilization, GntR family |
| VP1327 |
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Gene: VP1327: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |